#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 91-31-92-83-74-95-86-7
1 IL_3U5F_0523U5F0.18630618S rRNAG985G986G987A988U989C990*G1014U1015C1016cWWcWwcWW
2 IL_4BPP_0484BPP0.00000A18S RRNAG963G964G965A966U967C968*G992U993C994cWWntSHcWwcWW
3 IL_3U5F_0253U5F0.91521618S rRNAC443C444A445A446U447C448*G458A460G461cSHcWWtWHcWScWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGGAUC*GUC2
CCAAUC*GGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GGAU*U2
CAAU*GA1

Release history

Release1.51.61.71.81.91.101.111.121.131.141.15
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-272014-06-20
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_07300.2Only in the parent motif
IL_07300.1
Compare
IL_3U5F_052, IL_3U5F_025IL_4BPP_048

Children motifs

Child motifCommon motif instancesOnly in IL_07300.2Only in the child motif
IL_07300.3
Compare
IL_3U5F_052, IL_4BPP_048IL_3U5F_025
IL_59276.1
Compare
IL_3U5F_025IL_3U5F_052, IL_4BPP_048IL_1VX6_068, IL_3J7A_022, IL_3U5H_068, IL_4CUV_069
Annotations
  • (3)
  • Basepair signature
    cWW-cSH-L-cWW-cWW
    Heat map statistics
    Min 0.19 | Avg 0.46 | Max 0.96
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