Motif IL_07300.2 Version IL_07300.2 of this group appears in releases 1.5 to 1.15
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-3 | 1-9 | 2-8 | 3-7 | 4-9 | 5-8 | 6-7 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3U5F_052 | 3U5F | 0.1863 | 0 | 6 | 18S rRNA | G | 985 | G | 986 | G | 987 | A | 988 | U | 989 | C | 990 | * | G | 1014 | U | 1015 | C | 1016 | cWW | cWw | cWW | ||||
2 | IL_4BPP_048 | 4BPP | 0.0000 | 0 | A | 18S RRNA | G | 963 | G | 964 | G | 965 | A | 966 | U | 967 | C | 968 | * | G | 992 | U | 993 | C | 994 | cWW | ntSH | cWw | cWW | |||
3 | IL_3U5F_025 | 3U5F | 0.9152 | 1 | 6 | 18S rRNA | C | 443 | C | 444 | A | 445 | A | 446 | U | 447 | C | 448 | * | G | 458 | A | 460 | G | 461 | cSH | cWW | tWH | cWS | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGGAUC*GUC | 2 |
CCAAUC*GGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGAU*U | 2 |
CAAU*GA | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_07300.2 | Only in the parent motif |
---|---|---|---|
IL_07300.1 Compare | IL_3U5F_052, IL_3U5F_025 | IL_4BPP_048 |
Children motifs
Child motif | Common motif instances | Only in IL_07300.2 | Only in the child motif |
---|---|---|---|
IL_07300.3 Compare | IL_3U5F_052, IL_4BPP_048 | IL_3U5F_025 | |
IL_59276.1 Compare | IL_3U5F_025 | IL_3U5F_052, IL_4BPP_048 | IL_1VX6_068, IL_3J7A_022, IL_3U5H_068, IL_4CUV_069 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cSH-L-cWW-cWW
- Heat map statistics
- Min 0.19 | Avg 0.46 | Max 0.96
Coloring options: