Motif IL_07547.1 Version IL_07547.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 3-13 | 4-12 | 5-6 | 6-11 | 7-10 | 8-9 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1Q96_001 | 1Q96 | 0.2223 | 0 | 8x7 Sarcin-Ricin; G-bulge | A | sarcin/ricin 28S rRNA | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | U | 13 | * | A | 18 | G | 19 | A | 20 | A | 21 | C | 22 | C | 23 | G | 24 | cWW | tSH | cSH | tWH | tHS | cWW | |
| 2 | IL_1Q96_003 | 1Q96 | 0.1295 | 0 | C | sarcin/ricin 28S rRNA | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | U | 13 | * | A | 18 | G | 19 | A | 20||A | A | 21||A | C | 22||A | C | 23 | G | 24 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 3 | IL_2ZJR_007 | 2ZJR | 0.0972 | 0 | X | LSU rRNA | G | 215 | U | 216 | U | 217 | A | 218 | G | 219 | U | 220 | A | 221 | G | 222 | * | C | 230 | G | 231 | A | 232 | A | 233 | C | 234 | C | 235 | C | 236 | cWW | tSH | ntHH | cSH | tWH | tHS | cWW | |
| 4 | IL_1JBR_001 | 1JBR | 0.0811 | 0 | 8x7 Sarcin-Ricin; G-bulge | C+F | RNA (18-mer) + RNA (13-mer) | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | C | 13 | * | G | 18 | G | 19 | A | 20 | A | 21 | C | 22 | C | 23 | G | 24 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 5 | IL_1JBR_002 | 1JBR | 0.0000 | 0 | D | 31-mer SRD RNA analog | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | C | 13 | * | G | 18 | G | 19 | A | 20 | A | 21 | C | 22 | C | 23 | G | 24 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 6 | IL_1Q96_002 | 1Q96 | 0.0718 | 0 | B | sarcin/ricin 28S rRNA | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | U | 13 | * | A | 18 | G | 19 | A | 20 | A | 21||A | C | 22||A | C | 23||A | G | 24 | cWW | tSH | tHH | cSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCAGUAU*AGAACCG | 3 |
| CUCAGUAC*GGAACCG | 2 |
| GUUAGUAG*CGAACCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGUA*GAACC | 5 |
| UUAGUA*GAACC | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_07547.1 | Only in the parent motif |
|---|---|---|---|
| IL_87158.1 Compare | IL_1Q96_003, IL_1Q96_002, IL_1Q96_001, IL_2ZJR_007, IL_1JBR_001, IL_1JBR_002 | IL_2ZJR_045, IL_3F1H_006, IL_1S72_006, IL_2ZJR_006, IL_3F1H_047 |
Children motifs
| Child motif | Common motif instances | Only in IL_07547.1 | Only in the child motif |
|---|---|---|---|
| IL_85647.1 Compare | IL_1Q96_003, IL_1Q96_002, IL_1Q96_001, IL_2ZJR_007, IL_1JBR_001, IL_1JBR_002 | IL_3UXR_006, IL_2ZJR_045, IL_2QBG_048, IL_3UXR_046, IL_4A1C_008, IL_2ZJR_006, IL_1S72_006, IL_3U5H_148, IL_4A1B_003, IL_2QBG_011, IL_4A1B_118, IL_3U5H_122 |
- Annotations
-
- 8x7 Sarcin-Ricin; G-bulge (2)
- Basepair signature
- Heat map statistics
- Min 0.07 | Avg 0.12 | Max 0.23
Coloring options: