Motif IL_08760.1 Version IL_08760.1 of this group appears in releases 0.4 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-7 | 3-8 | 4-7 | 4-8 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_056 | 1S72 | 0.0000 | 1 | tSH-tHH-tHS (H) | 0 | LSU rRNA | C | 1570 | G | 1571 | A | 1572 | A | 1573 | C | 1574 | * | G | 1622 | C | 1623 | A | 1624 | A | 1626 | G | 1627 | cWW | tSH | tHH | tHS | cWW | ||
| 2 | IL_1S72_089 | 1S72 | 0.8410 | 4 | 0 | LSU rRNA | G | 2809 | G | 2810 | A | 2811 | A | 2813 | G | 2817 | * | C | 2672 | U | 2673 | G | 2674 | A | 2675 | C | 2676 | cWW | tSH | tHW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAC*GCAUAG | 1 |
| GGAAAAGAG*CUGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*CAUA | 1 |
| GAAAAGA*UGA | 1 |
Release history
| Release | 0.4 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_08760.1 | Only in the parent motif |
|---|---|---|---|
| IL_42271.1 Compare | IL_1S72_056, IL_1S72_089 | IL_3F1H_099, IL_2ZJR_094 |
Children motifs
| Child motif | Common motif instances | Only in IL_08760.1 | Only in the child motif |
|---|---|---|---|
| IL_89238.1 Compare | IL_1S72_056 | IL_1S72_089 | |
| IL_94438.1 Compare | IL_1S72_089 | IL_1S72_056 | IL_3PYO_089, IL_2QBG_100, IL_2ZJR_094 |
- Annotations
-
- tSH-tHH-tHS (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.84 | Avg 0.42 | Max 0.84
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