Motif IL_08926.2 Version IL_08926.2 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_110 | 3U5H | 0.4278 | 0 | 5 | 25S rRNA | U | 2862 | G | 2863 | * | U | 2826 | U | 2827 | G | 2828 | cWW | cWW | ||
| 2 | IL_1S72_081 | 1S72 | 0.3637 | 0 | Major groove platform (H) | 0 | LSU rRNA | U | 2528 | G | 2529 | * | U | 2492 | C | 2493 | G | 2494 | cWW | cWW | cHH |
| 3 | IL_1S72_084 | 1S72 | 0.0000 | 0 | Major groove platform (H) | 0 | LSU rRNA | C | 2542 | G | 2543 | * | U | 2615 | G | 2616 | G | 2617 | cWW | cWW | nchH |
| 4 | IL_3U5H_113 | 3U5H | 0.0933 | 0 | 5 | 25S rRNA | C | 2876 | G | 2877 | * | U | 2949 | G | 2950 | G | 2951 | cWW | cWW | nchH | |
| 5 | IL_3V2F_093 | 3V2F | 0.1096 | 0 | A | 23S Ribosomal RNA | C | 2507 | G | 2508 | * | U | 2580 | G | 2581 | G | 2582 | cWW | cWW | chH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGG | 3 |
| UG*UUG | 1 |
| UG*UCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 3 |
| *U | 1 |
| *C | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_08926.2 | Only in the parent motif |
|---|---|---|---|
| IL_08926.1 Compare | IL_3U5H_110, IL_3U5H_113, IL_3V2F_093, IL_1S72_081, IL_1S72_084 | IL_3V2F_069 |
Children motifs
| Child motif | Common motif instances | Only in IL_08926.2 | Only in the child motif |
|---|---|---|---|
| IL_08926.3 Compare | IL_3U5H_110, IL_3U5H_113, IL_3V2F_093, IL_1S72_081, IL_1S72_084 | IL_4BPP_018 |
- Annotations
-
- (3)
- Major groove platform (H) (2)
- Basepair signature
- cWW-cHH-cWW
- Heat map statistics
- Min 0.09 | Avg 0.23 | Max 0.44
Coloring options: