#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-34-5
1 IL_4BPP_0184BPP0.95213A18S RRNAU336G337*U309C310A314cWWcWW
2 IL_3U5H_1103U5H0.42720525S rRNAU2862G2863*U2826U2827G2828cWWcWW
3 IL_1S72_0811S720.37900Major groove platform (H)0 LSU rRNAU2528G2529*U2492C2493G2494cWWcWWcHH
4 IL_1S72_0841S720.10960Major groove platform (H)0 LSU rRNAC2542G2543*U2615G2616G2617cWWcWWnchH
5 IL_3U5H_1133U5H0.10960525S rRNAC2876G2877*U2949G2950G2951cWWcWWnchH
6 IL_3V2F_0933V2F0.00000A23S Ribosomal RNAC2507G2508*U2580G2581G2582cWWcWWchH

3D structures

Complete motif including flanking bases
SequenceCounts
CG*UGG3
UG*UCUCGA1
UG*UUG1
UG*UCG1
Non-Watson-Crick part of the motif
SequenceCounts
*G3
*CUCG1
*U1
*C1

Release history

Release1.51.61.71.81.91.101.111.121.13
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_08926.3Only in the parent motif
IL_08926.2
Compare
IL_3U5H_110, IL_3U5H_113, IL_3V2F_093, IL_1S72_081, IL_1S72_084IL_4BPP_018

Children motifs

Child motifCommon motif instancesOnly in IL_08926.3Only in the child motif
IL_08926.4
Compare
IL_3U5H_113, IL_3U5H_110, IL_1S72_081, IL_4BPP_018, IL_1S72_084IL_3V2F_093IL_1VW3_078, IL_4NVV_092
Annotations
  • (4)
  • Major groove platform (H) (2)
  • Basepair signature
    cWW-cHH-cWW
    Heat map statistics
    Min 0.09 | Avg 0.43 | Max 0.99
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