Motif IL_08926.3 Version IL_08926.3 of this group appears in releases 1.5 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4BPP_018 | 4BPP | 0.9521 | 3 | A | 18S RRNA | U | 336 | G | 337 | * | U | 309 | C | 310 | A | 314 | cWW | cWW | ||
2 | IL_3U5H_110 | 3U5H | 0.4272 | 0 | 5 | 25S rRNA | U | 2862 | G | 2863 | * | U | 2826 | U | 2827 | G | 2828 | cWW | cWW | ||
3 | IL_1S72_081 | 1S72 | 0.3790 | 0 | Major groove platform (H) | 0 | LSU rRNA | U | 2528 | G | 2529 | * | U | 2492 | C | 2493 | G | 2494 | cWW | cWW | cHH |
4 | IL_1S72_084 | 1S72 | 0.1096 | 0 | Major groove platform (H) | 0 | LSU rRNA | C | 2542 | G | 2543 | * | U | 2615 | G | 2616 | G | 2617 | cWW | cWW | nchH |
5 | IL_3U5H_113 | 3U5H | 0.1096 | 0 | 5 | 25S rRNA | C | 2876 | G | 2877 | * | U | 2949 | G | 2950 | G | 2951 | cWW | cWW | nchH | |
6 | IL_3V2F_093 | 3V2F | 0.0000 | 0 | A | 23S Ribosomal RNA | C | 2507 | G | 2508 | * | U | 2580 | G | 2581 | G | 2582 | cWW | cWW | chH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CG*UGG | 3 |
UG*UCUCGA | 1 |
UG*UUG | 1 |
UG*UCG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*G | 3 |
*CUCG | 1 |
*U | 1 |
*C | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_08926.3 | Only in the parent motif |
---|---|---|---|
IL_08926.2 Compare | IL_3U5H_110, IL_3U5H_113, IL_3V2F_093, IL_1S72_081, IL_1S72_084 | IL_4BPP_018 |
Children motifs
Child motif | Common motif instances | Only in IL_08926.3 | Only in the child motif |
---|---|---|---|
IL_08926.4 Compare | IL_3U5H_113, IL_3U5H_110, IL_1S72_081, IL_4BPP_018, IL_1S72_084 | IL_3V2F_093 | IL_1VW3_078, IL_4NVV_092 |
- Annotations
-
- (4)
- Major groove platform (H) (2)
- Basepair signature
- cWW-cHH-cWW
- Heat map statistics
- Min 0.09 | Avg 0.43 | Max 0.99
Coloring options: