#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-34-5
1 IL_4BPP_0184BPP0.93323A18S RRNAU336G337*U309C310A314cWWcWW
2 IL_3U5H_1103U5H0.41550525S rRNAU2862G2863*U2826U2827G2828cWWcWW
3 IL_1S72_0811S720.37150Major groove platform (H)0 LSU rRNAU2528G2529*U2492C2493G2494cWWcWWcHH
4 IL_1VW3_0781VW30.07670A21S ribosomal RNAC2773G2774*U2847G2848G2849cWWcWWchH
5 IL_4NVV_0924NVV0.00000A23S Ribosomal RNAC2519G2520*U2592G2593G2594cWWcWWchH
6 IL_3U5H_1133U5H0.11460525S rRNAC2876G2877*U2949G2950G2951cWWcWWnchH
7 IL_1S72_0841S720.12050Major groove platform (H)0 LSU rRNAC2542G2543*U2615G2616G2617cWWcWWnchH

3D structures

Complete motif including flanking bases
SequenceCounts
CG*UGG4
UG*UCUCGA1
UG*UUG1
UG*UCG1
Non-Watson-Crick part of the motif
SequenceCounts
*G4
*CUCG1
*U1
*C1

Release history

Release1.141.15
Date2014-04-272014-06-20
StatusUpdated, 1 parentExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_08926.4Only in the parent motif
IL_08926.3
Compare
IL_3U5H_113, IL_3U5H_110, IL_1S72_081, IL_4BPP_018, IL_1S72_084IL_1VW3_078, IL_4NVV_092IL_3V2F_093

Children motifs

Child motifCommon motif instancesOnly in IL_08926.4Only in the child motif
IL_08926.5
Compare
IL_4BPP_018, IL_1S72_081, IL_3U5H_110, IL_3U5H_113, IL_1VW3_078, IL_1S72_084IL_4NVV_092IL_4QCN_093
Annotations
  • (5)
  • Major groove platform (H) (2)
  • Basepair signature
    cWW-cHH-cWW
    Heat map statistics
    Min 0.08 | Avg 0.40 | Max 0.99
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.4675 s