Motif IL_08926.4 Version IL_08926.4 of this group appears in releases 1.14 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_018 | 4BPP | 0.9332 | 3 | A | SSU rRNA | U | 336 | G | 337 | * | U | 309 | C | 310 | A | 314 | cWW | cWW | ||
| 2 | IL_3U5H_110 | 3U5H | 0.4155 | 0 | 5 | LSU rRNA | U | 2862 | G | 2863 | * | U | 2826 | U | 2827 | G | 2828 | cWW | cWW | ||
| 3 | IL_1S72_081 | 1S72 | 0.3715 | 0 | Major groove platform (H) | 0 | LSU rRNA | U | 2528 | G | 2529 | * | U | 2492 | C | 2493 | G | 2494 | cWW | cWW | cHH |
| 4 | IL_1VW3_078 | 1VW3 | 0.0767 | 0 | A | LSU rRNA | C | 2773 | G | 2774 | * | U | 2847 | G | 2848 | G | 2849 | cWW | cWW | chH | |
| 5 | IL_4NVV_092 | 4NVV | 0.0000 | 0 | A | LSU rRNA | C | 2519 | G | 2520 | * | U | 2592 | G | 2593 | G | 2594 | cWW | cWW | chH | |
| 6 | IL_3U5H_113 | 3U5H | 0.1146 | 0 | 5 | LSU rRNA | C | 2876 | G | 2877 | * | U | 2949 | G | 2950 | G | 2951 | cWW | cWW | nchH | |
| 7 | IL_1S72_084 | 1S72 | 0.1205 | 0 | Major groove platform (H) | 0 | LSU rRNA | C | 2542 | G | 2543 | * | U | 2615 | G | 2616 | G | 2617 | cWW | cWW | nchH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGG | 4 |
| UG*UCUCGA | 1 |
| UG*UUG | 1 |
| UG*UCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 4 |
| *CUCG | 1 |
| *U | 1 |
| *C | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_08926.4 | Only in the parent motif |
|---|---|---|---|
| IL_08926.3 Compare | IL_3U5H_113, IL_3U5H_110, IL_1S72_081, IL_4BPP_018, IL_1S72_084 | IL_1VW3_078, IL_4NVV_092 | IL_3V2F_093 |
Children motifs
| Child motif | Common motif instances | Only in IL_08926.4 | Only in the child motif |
|---|---|---|---|
| IL_08926.5 Compare | IL_4BPP_018, IL_1S72_081, IL_3U5H_110, IL_3U5H_113, IL_1VW3_078, IL_1S72_084 | IL_4NVV_092 | IL_4QCN_093 |
- Annotations
-
- (5)
- Major groove platform (H) (2)
- Basepair signature
- cWW-cHH-cWW
- Heat map statistics
- Min 0.08 | Avg 0.40 | Max 0.99
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