Motif IL_08926.6 Version IL_08926.6 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_110 | 3U5H | 0.4175 | 0 | 5 | LSU rRNA | U | 2862 | G | 2863 | * | U | 2826 | U | 2827 | G | 2828 | cWW | cWW | ||
| 2 | IL_1VW3_078 | 1VW3 | 0.1161 | 0 | A | LSU rRNA | C | 2773 | G | 2774 | * | U | 2847 | G | 2848 | G | 2849 | cWW | cWW | chH | |
| 3 | IL_4QCN_093 | 4QCN | 0.0000 | 0 | A | LSU rRNA | C | 2519 | G | 2520 | * | U | 2592 | G | 2593 | G | 2594 | cWW | cWW | chH | |
| 4 | IL_1S72_084 | 1S72 | 0.0882 | 0 | Major groove platform (H) | 0 | LSU rRNA | C | 2542 | G | 2543 | * | U | 2615 | G | 2616 | G | 2617 | cWW | cWW | nchH |
| 5 | IL_3U5H_113 | 3U5H | 0.0957 | 0 | 5 | LSU rRNA | C | 2876 | G | 2877 | * | U | 2949 | G | 2950 | G | 2951 | cWW | cWW | nchH | |
| 6 | IL_3WBM_004 | 3WBM | 0.7905 | 0 | Other IL | X+Y | RNA (25-MER) | U | 23 | C | 24 | * | G | 2 | U | 3 | A | 4 | cWW | cWW | |
| 7 | IL_4BPP_018 | 4BPP | 0.9476 | 3 | A | SSU rRNA | U | 336 | G | 337 | * | U | 309 | C | 310 | A | 314 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGG | 4 |
| UG*UUG | 1 |
| UC*GUA | 1 |
| UG*UCUCGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 4 |
| *U | 2 |
| *CUCG | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_08926.6 | Only in the parent motif |
|---|---|---|---|
| IL_08926.5 Compare | IL_4BPP_018, IL_1VW3_078, IL_4QCN_093, IL_3U5H_110, IL_3U5H_113, IL_1S72_084 | IL_3WBM_004 | IL_1S72_081 |
| IL_40987.1 Compare | IL_3WBM_004 | IL_4BPP_018, IL_1VW3_078, IL_4QCN_093, IL_3U5H_110, IL_3U5H_113, IL_1S72_084 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Major groove platform (H) (1)
- Other IL (1)
- Basepair signature
- cWW-cHH-cWW
- Heat map statistics
- Min 0.09 | Avg 0.49 | Max 0.99
Coloring options: