Motif IL_08966.4 Version IL_08966.4 of this group appears in releases 3.46 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 2-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4ERD_003 | 4ERD | 0.9380 | 2 | C+D | RNA (22-mer) | G | 146 | G | 147 | A | 148 | * | U | 119 | C | 120 | C | 123 | cWW | ntSs | cWW | ||
| 2 | IL_4V88_395 | 4V88 | 0.0000 | 0 | Isolated non-canonical cWW contact | A6 | SSU rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW | ||
| 3 | IL_4JGN_003 | 4JGN | 0.2656 | 0 | Isolated non-canonical cWW pair | E | RNA (20-mer) | C | 511||||4_555 | U | 512||||4_555 | G | 513||||4_555 | * | C | 511 | U | 512 | G | 513 | cWW | ncWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGA*UCGAC | 1 |
| UGU*AGA | 1 |
| CUG*CUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*CGA | 1 |
| G*G | 1 |
| U*U | 1 |
- Annotations
-
- (1)
- Isolated non-canonical cWW pair (1)
- Isolated non-canonical cWW contact (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.27 | Avg 0.48 | Max 0.97
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