Motif IL_09018.1 Version IL_09018.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 2-4 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KQY_004 | 4KQY | 0.3823 | 1 | Minor groove platform | A | SAM-I riboswitch | C | 73 | A | 74 | G | 76 | * | C | 49 | G | 50 | cWW | ncSH | cWW | |
| 2 | IL_8P9A_339 | 8P9A | 0.3441 | 1 | Major groove platform with intercalation (H) | AR | LSU rRNA | U | 2909 | A | 2910 | G | 2912 | * | U | 2891 | A | 2892 | cWW | tSH | cWW | |
| 3 | IL_4V9F_089 | 4V9F | 0.1575 | 1 | Major groove platform with intercalation | 0 | LSU rRNA | C | 2575 | A | 2576 | G | 2578 | * | U | 2557 | G | 2558 | cWW | ntSH | cWW | |
| 4 | IL_9DFE_099 | 9DFE | 0.1221 | 1 | 1A | LSU rRNA | C | 2540 | A | 2541 | G | 2543 | * | U | 2522 | G | 2523 | cWW | ntSH | cWW | ||
| 5 | IL_4WF9_097 | 4WF9 | 0.0871 | 1 | Major groove platform with intercalation | X | LSU rRNA | C | 2567 | A | 2568 | G | 2570 | * | U | 2549 | G | 2550 | cWW | ntSH | cWW | |
| 6 | IL_5J7L_342 | 5J7L | 0.0000 | 1 | Major groove platform with intercalation | DA | LSU rRNA | C | 2540 | A | 2541 | G | 2543 | * | U | 2522 | G | 2523 | cWW | ntSH | cWW | |
| 7 | IL_7A0S_091 | 7A0S | 0.1106 | 1 | Major groove platform with intercalation | X | LSU rRNA | C | 2519 | A | 2520 | G | 2522 | * | U | 2501 | G | 2502 | cWW | cWW | ||
| 8 | IL_7VTI_002 | 7VTI | 0.4914 | 2 | B | crRNA | G | 5 | A | 6 | A | 9 | * | U | 30 | U | 31 | cWW | cWW | |||
| 9 | IL_5DCV_006 | 5DCV | 0.5892 | 1 | Major groove platform with intercalated tWH | D | RNA (47-MER) | C | 45 | U | 46 | A | 48 | * | U | 5 | G | 6 | cWW | cWW | ||
| 10 | IL_5VCI_003 | 5VCI | 0.6241 | 1 | Major groove platform with intercalated tWH | A+B | RNA (22-mer) + RNA (12-mer) | C | 8 | U | 9 | A | 11 | * | U | 4 | G | 5 | cWW | cWW | ||
| 11 | IL_4PCJ_003 | 4PCJ | 0.6174 | 1 | Major groove platform with intercalated tWH | A | trCUG-3('5) | C | 8 | U | 9 | A | 11 | * | U | 27 | G | 28 | cWW | cWW | ||
| 12 | IL_5XTM_005 | 5XTM | 0.5907 | 1 | Major groove platform with intercalated tWH | D | RNA (47-MER) | C | 41 | U | 42 | A | 44 | * | U | 5 | G | 6 | cWW | cWW | ||
| 13 | IL_4LCK_008 | 4LCK | 0.6786 | 1 | Other IL | F | T-BOX RIBOSWITCH STEM I | G | 28 | A | 29 | U | 31 | * | A | 77 | C | 78 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*UG | 5 |
| CUAA*UG | 4 |
| CAAG*CG | 1 |
| UAAG*UA | 1 |
| GAGCA*UU | 1 |
| GAUU*AC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 7 |
| UA* | 4 |
| AGC* | 1 |
| AU* | 1 |
- Annotations
-
- Major groove platform with intercalated tWH (4)
- Major groove platform with intercalation (4)
- (2)
- Minor groove platform (1)
- Other IL (1)
- Major groove platform with intercalation (H) (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.07 | Avg 0.48 | Max 0.92
Coloring options: