Motif IL_09061.4 Version IL_09061.4 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-4 | 1-6 | 2-3 | 2-5 | 4-5 | 4-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U9S_004 | 1U9S | 0.6048 | 0 | Major groove minor groove platform; mini C-loop | A | RIBONUCLEASE P | C | 133 | G | 134 | * | C | 164 | A | 165 | A | 166 | G | 167 | ncBW | cWW | cWW | cSH | ||
| 2 | IL_5J7L_357 | 5J7L | 0.2657 | 0 | Major groove minor groove platform; mini C-loop | DB | 5S rRNA | C | 30 | C | 31 | * | G | 51 | A | 52 | A | 53 | G | 54 | ncBW | cWW | cWW | cSW | ncSH | ncSH |
| 3 | IL_4V9F_103 | 4V9F | 0.2434 | 0 | Major groove minor groove platform; mini C-loop | 9 | 5S rRNA | C | 29 | C | 30 | * | G | 50 | A | 51 | A | 52 | G | 53 | ncBW | cWW | cWW | cSW | cSH | |
| 4 | IL_7RQB_113 | 7RQB | 0.2334 | 0 | Major groove minor groove platform; mini C-loop | 1B | 5S rRNA | C | 30 | C | 31 | * | G | 51 | A | 52 | A | 53 | G | 54 | ncBW | cWW | cWW | cSW | cSH | |
| 5 | IL_5J7L_316 | 5J7L | 0.2446 | 0 | Major groove minor groove platform; mini C-loop | DA | LSU rRNA | C | 1893 | C | 1894 | * | G | 1846 | A | 1847 | A | 1848 | G | 1849 | ncBW | cWW | cWW | ncSW | ncSH | |
| 6 | IL_1I6U_002 | 1I6U | 0.0908 | 0 | Major groove minor groove platform; mini C-loop | C | 16S RRNA FRAGMENT | G | 12 | U | 13 | * | A | 24 | U | 25 | A | 26 | C | 27 | cWW | cWW | ncSW | cSH | ncSH | |
| 7 | IL_4LFB_025 | 4LFB | 0.0835 | 0 | Major groove minor groove platform; mini C-loop | A | SSU rRNA | G | 597 | U | 598 | * | A | 640 | U | 641 | A | 642 | C | 643 | cWW | cWW | ncSW | ncSH | ncSH | |
| 8 | IL_4PDB_002 | 4PDB | 0.0763 | 0 | Major groove minor groove platform; mini C-loop | I | SELEX RNA aptamer | A | 14 | U | 15 | * | A | 24 | U | 25 | A | 26 | U | 27 | cWW | cWW | ncSW | ncSH | ||
| 9 | IL_5J7L_029 | 5J7L | 0.0791 | 0 | Major groove minor groove platform; mini C-loop | AA | SSU rRNA | G | 597 | U | 598 | * | A | 640 | U | 641 | A | 642 | C | 643 | cWW | cWW | ncSW | cSH | ncSH | |
| 10 | IL_1S03_007 | 1S03 | 0.0282 | 0 | Major groove minor groove platform; mini C-loop | B | 47-MER | G | 37 | U | 38 | * | A | 12 | A | 13 | A | 14 | C | 15 | ntHW | cWW | cWW | ncSW | cSH | ncSH |
| 11 | IL_1S03_003 | 1S03 | 0.0000 | 0 | Major groove minor groove platform; mini C-loop | A | 47-MER | G | 37 | U | 38 | * | A | 12 | A | 13 | A | 14 | C | 15 | ntHW | cWW | cWW | ncSW | cSH | ncSH |
| 12 | IL_4V88_423 | 4V88 | 0.1607 | 0 | Major groove minor groove platform; mini C-loop | A6 | SSU rRNA | A | 746 | C | 747 | * | G | 802 | A | 803 | A | 804 | U | 805 | cWW | cWW | cSH | |||
| 13 | IL_6CZR_137 | 6CZR | 0.2362 | 0 | Major groove minor groove platform; mini C-loop | 1a | SSU rRNA | G | 581 | U | 582 | * | A | 624 | U | 625 | A | 626 | C | 627 | cWW | ncWW | ncSH | |||
| 14 | IL_4V9F_068 | 4V9F | 0.4380 | 0 | Major groove minor groove platform; mini C-loop | 0 | LSU rRNA | A | 1934 | C | 1935 | * | G | 1902 | U | 1903 | A | 1904 | U | 1905 | cWW | cWW | ||||
| 15 | IL_7A0S_068 | 7A0S | 0.5055 | 0 | Major groove minor groove platform; mini C-loop | X | LSU rRNA | C | 1876 | C | 1877 | * | G | 1838 | A | 1839 | A | 1840 | G | 1841 | cWW | cWW | ncSW | |||
| 16 | IL_1U9S_005 | 1U9S | 0.5210 | 0 | Minor groove platform, major groove intercalation | A | RIBONUCLEASE P | G | 161 | G | 162 | * | C | 136 | A | 137 | G | 138 | C | 139 | cWW | cWW | ntSH | |||
| 17 | IL_1U9S_002 | 1U9S | 0.5649 | 1 | Major groove intercalation | A | RIBONUCLEASE P | C | 228 | C | 229 | * | G | 111 | A | 112 | A | 114 | G | 115 | cWW | cWW | ||||
| 18 | IL_3TZR_001 | 3TZR | 0.6248 | 3 | Major groove intercalation | B+A | RNA (16-mer) | G | 110 | C | 111 | * | G | 52 | A | 53 | A | 57 | C | 58 | cWW | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GAAG | 5 |
| GU*AUAC | 4 |
| GU*AAAC | 2 |
| CG*CAAG | 1 |
| AU*AUAU | 1 |
| AC*GAAU | 1 |
| AC*GUAU | 1 |
| GG*CAGC | 1 |
| CC*GAAAG | 1 |
| GC*GAACUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 9 |
| *UA | 6 |
| *AG | 1 |
| *AAA | 1 |
| *AACUA | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove minor groove platform; mini C-loop (15)
- Major groove intercalation (2)
- Minor groove platform, major groove intercalation (1)
- Basepair signature
- cWW-cSW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.39 | Max 0.91
Coloring options: