Motif IL_09732.4 Version IL_09732.4 of this group appears in releases 3.27 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_400 | 4V88 | 0.8738 | 0 | A6 | SSU rRNA | C | 270 | A | 271 | U | 272 | G | 273 | * | U | 283 | G | 284 | G | 285 | cWW | cWW | |
| 2 | IL_4ZNP_003 | 4ZNP | 0.0000 | 9 | A | pfI Riboswitch | C | 34 | G | 35 | U | 36 | G | 37 | * | C | 12 | U | 13 | G | 23 | cWW | cWw | cWW |
| 3 | IL_5BTP_005 | 5BTP | 0.1288 | 8 | B | RNA (62-MER) | C | 38 | A | 39 | U | 40 | G | 41 | * | C | 15 | U | 16 | G | 25 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUG*UGG | 1 |
| CGUG*CUGGCGGAUUAG | 1 |
| CAUG*CUGACGGAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*G | 1 |
| GU*UGGCGGAUUA | 1 |
| AU*UGACGGAAC | 1 |
Release history
| Release | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.13 | Avg 0.42 | Max 0.90
Coloring options: