Motif IL_09882.1 Version IL_09882.1 of this group appears in releases 0.1 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1KD5_001 | 1KD5 | 0.0000 | 0 | tSH-tHW-tWH-tHS | A+B | RNA (11-mer) | U | 3 | C | 4 | A | 5 | C | 6 | A | 7 | G | 8 | * | U | 3 | C | 4 | A | 5 | C | 6 | A | 7 | G | 8 | cWW | tSH | tHW | tWH | tHS | cWW |
| 2 | IL_283D_001 | 283D | 0.5246 | 0 | tSH-tHW-tWH-tHS | A | RNA (12-mer) | C | 4 | G | 5 | A | 6 | A | 7 | A | 8 | G | 9 | * | C | 4||||12_555 | G | 5||||12_555 | A | 6||||12_555 | A | 7||||12_555 | A | 8||||12_555 | G | 9||||12_555 | cWW | tSH | tHW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCACAG*UCACAG | 1 |
| CGAAAG*CGAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CACA*CACA | 1 |
| GAAA*GAAA | 1 |
Release history
| Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tSH-tHW-tWH-tHS (2)
- Basepair signature
- cWW-tSH-tHW-tWH-tHS-cWW
- Heat map statistics
- Min 0.52 | Avg 0.26 | Max 0.52
Coloring options: