Motif IL_09901.1 Version IL_09901.1 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_046 | 2QBG | 0.0000 | 1 | B | 23S rRNA | G | 1202 | U | 1203 | A | 1204 | G | 1206 | * | U | 1240 | A | 1241 | U | 1242 | C | 1243 | cWW | cwW | ntWW | cWW |
| 2 | IL_3BNQ_005 | 3BNQ | 0.8358 | 1 | A+B | A site of human mitochondrial ribosome, A chain | G | 15 | C | 16 | A | 17 | G | 19 | * | C | 7 | A | 8 | C | 9 | C | 10 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAAG*UAUC | 1 |
| GCAAG*CACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*AU | 1 |
| CAA*AC | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_09901.1 | Only in the parent motif |
|---|---|---|---|
| IL_57216.1 Compare | IL_3BNQ_005 | IL_2QBG_046 | IL_2QBG_057, IL_3V2F_043 |
| IL_64648.1 Compare | IL_2QBG_046 | IL_3BNQ_005 | IL_255D_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_09901.1 | Only in the child motif |
|---|---|---|---|
| IL_05684.1 Compare | IL_3BNQ_005 | IL_2QBG_046 | IL_3BNP_003, IL_3BNP_002, IL_3V2F_043, IL_2QBG_057 |
| IL_30381.1 Compare | IL_2QBG_046 | IL_3BNQ_005 | IL_255D_001 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-L-cWW
- Heat map statistics
- Min 0.84 | Avg 0.42 | Max 0.84
Coloring options: