Motif IL_10007.2 Version IL_10007.2 of this group appears in releases 1.0 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4AOB_003 | 4AOB | 0.0943 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | ncSH | cWW | |
| 2 | IL_3GX5_003 | 3GX5 | 0.0000 | 0 | A | RNA (94-MER) | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | cSH | cWW | ||
| 3 | IL_3V7E_007 | 3V7E | 0.1284 | 0 | Major groove platform with extra pair (H) | D | SAM-I riboswitch | C | 244 | A | 245 | A | 246 | C | 247 | * | G | 288 | U | 289 | G | 290 | cWW | tSH | cSH | cWW | |
| 4 | IL_4B5R_003 | 4B5R | 0.2594 | 0 | Major groove platform with extra pair (H) | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | cSH | cWW | |
| 5 | IL_2QBG_087 | 2QBG | 0.5769 | 1 | B | 23S rRNA | A | 2317 | G | 2318 | G | 2319 | U | 2321 | * | A | 2297 | A | 2298 | U | 2299 | cWW | tSH | tSH | cWW | ||
| 6 | IL_4A1B_102 | 4A1B | 0.9333 | 1 | 1 | 26S RRNA | C | 2675 | G | 2676 | A | 2678 | G | 2679 | * | C | 2655 | A | 2656 | G | 2657 | cWW | tSH | cWW | |||
| 7 | IL_1S72_078 | 1S72 | 0.9731 | 1 | 0 | LSU rRNA | C | 2351 | G | 2352 | A | 2354 | G | 2355 | * | C | 2331 | A | 2332 | G | 2333 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAC*GUG | 4 |
| AGGUU*AAU | 1 |
| CGUAG*CAG | 1 |
| CGAAG*CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*U | 4 |
| GGU*A | 1 |
| GUA*A | 1 |
| GAA*A | 1 |
Release history
| Release | 1.0 |
|---|---|
| Date | 2013-03-04 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_10007.2 | Only in the parent motif |
|---|---|---|---|
| IL_10007.1 Compare | IL_3V7E_007, IL_2QBG_087, IL_3GX5_003, IL_1S72_078, IL_4AOB_003, IL_4A1B_102 | IL_4B5R_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_10007.2 | Only in the child motif |
|---|---|---|---|
| IL_43124.1 Compare | IL_3V7E_007, IL_3GX5_003, IL_4B5R_003, IL_4AOB_003 | IL_2QBG_087, IL_1S72_078, IL_4A1B_102 | IL_1X8W_009, IL_3Q1Q_006, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093, IL_3NPB_004, IL_3U5H_012 |
| IL_16207.1 Compare | IL_2QBG_087, IL_1S72_078, IL_4A1B_102 | IL_3V7E_007, IL_3GX5_003, IL_4B5R_003, IL_4AOB_003 | IL_3U5H_104, IL_4IOA_082 |
- Annotations
-
- (4)
- Major groove platform with extra pair (H) (2)
- Major groove platform with extra pair (1)
- Basepair signature
- cWW-tSH-cSH-cWW
- Heat map statistics
- Min 0.09 | Avg 0.52 | Max 1.00
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