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Motif IL_10167.3 Version IL_10167.3 of this group appears in releases 3.92 to 3.94

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_8C3A_4548C3A0.71580Other ILCM SSU rRNAA1219C1220A1221*U1234U1235U1236cWWcWW
2 IL_3LOA_0033LOA0.70751Decoding loop with one bulged AB+ARNA (23-mer)G1491A1493G1494*C1407A1408C1409cWWcWW
3 IL_2ET8_0032ET80.57111Decoding loop relatedA+BRNA (22-mer)G15A17G18*C29A30C31cWWcWW
4 IL_7A0S_0927A0S0.44631Other ILX LSU rRNAA2579C2580G2582*C2570G2571U2572cWWcWW
5 IL_8P9A_4648P9A0.57710Isolated tWW contactsR SSU rRNAC1711A1712G1713*U1688A1689G1690ncWWncWW
6 IL_8C3A_4078C3A0.47761Isolated cWH basepairCM SSU rRNAG285A286U287*A263U265C266cWWcWW
7 IL_7MLW_0067MLW0.40340Isolated tWW contactFGuanidine-I riboswitchC71U72U73*A92C93G94cWWcWW
8 IL_406D_004406D0.33550Isolated cWH basepairE+ARNA (17-mer)U25||BG26||BG27||B*U8||BG9||BG10||BcWWcHWcWW
9 IL_8AF0_0028AF00.28530Isolated cWH basepairD+CRNA (19-mer)G34U35C36*G34U35C36cWWcHWcWW
10 IL_4WF9_1214WF90.20180Isolated cWH basepairY 5S rRNAC110A111G112*U3G4G5cWWncHWncWWa
11 IL_8P9A_3948P9A0.22300Isolated cWH basepairsR SSU rRNAG389G390A391*U406A407C408cWWcHWcWW
12 IL_8C3A_4138C3A0.23860Isolated cWH basepairCM SSU rRNAG387G388A389*U404A405C406cWWcHWcWW
13 IL_3R1E_0013R1E0.19300Isolated cWH basepairA+BRNA (8-mer)C2GRB3G4*C5G6G7cWWcHWcWW
14 IL_5F5F_0015F5F0.22680Isolated cWH basepairBRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
15 IL_5F5F_0035F5F0.21530Isolated cWH basepairFRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
16 IL_8P9A_4428P9A0.25090Isolated cWH basepairsR SSU rRNAU1290G1291G1292*C1323G1324A1325cWWcHWcWW
17 IL_4WF9_0454WF90.18720Isolated cWH basepairX LSU rRNAC1277G1278C1279*G1243G1244G1245cWWcHWcWW
18 IL_3R1D_0023R1D0.17330Isolated cWH basepairA+BRNA (11-mer)C5G6G7*C5G6G7cWWcHWcWW
19 IL_5J7L_0115J7L0.16720Isolated cWH basepairAA SSU rRNAC176G177C178*G144G145G146cWWcHWcWW
20 IL_2H1M_0022H1M0.19190Isolated cWH basepairA+BRNA (16-mer)A5G6U7*A26A27U28cWWncHWcWW
21 IL_2H1M_0032H1M0.15750Isolated cWH basepairB+ARNA (16-mer)A21G22U23*A10A11U12cWWncHWcWW
22 IL_3D0M_0013D0M0.14510Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||16_545G11||||16_545A12||||16_545cWWcHWncWW
23 IL_6RA4_0026RA40.16450Isolated cWH basepairL+MRNA (9-mer)U403G404A405*U403G404A405cWWcHWcWW
24 IL_4KQ0_0044KQ00.14310Isolated cWH basepairE+BRNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
25 IL_4KQ0_0024KQ00.14220Isolated cWH basepairB+ERNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
26 IL_4J50_0034J500.17330Isolated cWH basepairA+BRNA (19-mer)C13A14G15*C7A8G9cWWcWW
27 IL_4J50_0014J500.17340Isolated cWH basepairB+ARNA (19-mer)C13A14G15*C7A8G9cWWcWW
28 IL_6IA2_0036IA20.18030Isolated cWH basepairA+BRNA (19-mer)C9G10||AG11*C9G10||AG11||AcWWcHWcWW
29 IL_4KQ0_0014KQ00.13170Isolated cWH basepairB+ERNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
30 IL_4KQ0_0054KQ00.13110Isolated cWH basepairE+BRNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
31 IL_3R1D_0033R1D0.13840Isolated cWH basepairB+ARNA (11-mer)C2||AGRB3G4*C8G9G10cWWcHWcWW
32 IL_3W3S_0033W3S0.08970Isolated cWH basepairBSelenocysteine transfer RNAG47|||AG47|||BU47|||C*A47|||NG47|||OC47|||PcWWcHWcWW
33 IL_2R1S_0022R1S0.12200Isolated cWH basepairB+ARNA (13-mer)5BU19G20A21*5BU6G7A8cWWcHWcWW
34 IL_3R1D_0143R1D0.09420Isolated cWH basepairA+BRNA (11-mer)C2||AGRB3||AG4||A*C8G9G10cWWcHWcWW
35 IL_4KQ0_0034KQ00.09910Isolated cWH basepairB+ERNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
36 IL_3SJ2_0023SJ20.06730Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C10G11G12*C10G11G12cWWcHWcWW
37 IL_3R1C_0173R1C0.08170Isolated cWH basepairR+QRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
38 IL_3R1C_0113R1C0.06280Isolated cWH basepairK+LRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
39 IL_3R1C_0123R1C0.05300Isolated cWH basepairL+KRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
40 IL_3R1C_0183R1C0.00000Isolated cWH basepairQ+RRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
41 IL_3SJ2_0033SJ20.05840Isolated cWH basepairB+ARNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
42 IL_3CZW_0013CZW0.06400Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||2_555G11||||2_555A12||||2_555cWWcHWcWW
43 IL_3SJ2_0013SJ20.07570Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
44 IL_4E5C_0014E5C0.12440Isolated cWH basepairB+ARNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
45 IL_406D_005406D0.16680Isolated cWH basepairA+ERNA (17-mer)U8||CG9||CG10||C*U25||CG26||CG27||CcWWncHWcWW
46 IL_406D_002406D0.17210Isolated cWH basepairE+ARNA (17-mer)U25||AG26||AG27||A*U8||AG9||AG10||AcWWncHWcWW
47 IL_406D_006406D0.35560Isolated cWH basepairE+ARNA (17-mer)U25||DG26||DG27||D*U8||DG9||DG10||DncWWncHWcWW
48 IL_8C3A_5108C3A0.39111Isolated cWH basepairCM SSU rRNAG942U943U945*G853A854C855cWWncWWa
49 IL_9DFE_0239DFE0.50751Other IL1A LSU rRNAC844G845C846*G931A933G934cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG15
UGG*UGG4
UGA*UGA3
GAAG*CAC2
GGA*UAC2
UGC*GGA2
CGC*GGG2
AGU*AAU2
CAG*CAG2
C(GRB)G*CGG2
ACA*UUU1
ACAG*CGU1
CAG*UAG1
GAU*AAUC1
CUU*ACG1
GUC*GUC1
CAG*UGG1
CG*CGG1
UGG*CGA1
GGU*AGC1
(5BU)GA*(5BU)GA1
GUUU*GAC1
CGC*GGAG1
Non-Watson-Crick part of the motif
SequenceCounts
G*G29
G*A4
A*A3
(GRB)*G3
AA*A2
C*U1
CA*G1
A*AU1
U*C1
U*U1
A*G1
UU*A1
G*GA1

Release history

Release3.923.933.94
Date2025-01-012025-01-292025-02-26
StatusUpdated, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (42)
  • Other IL (3)
  • Isolated tWW contact (2)
  • Decoding loop related (1)
  • Decoding loop with one bulged A (1)
    • Basepair signature
    cWW-cHW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.32 | Max 0.96
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