Motif IL_10207.2 Version IL_10207.2 of this group appears in releases 3.80 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-5 | 2-12 | 6-9 | 6-12 | 7-8 | 7-11 | 8-10 | 9-11 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4V9F_102 | 4V9F | 0.7239 | 1 | Minor groove platform related | 9 | 5S rRNA | G | 21 | G | 22 | U | 23 | G | 25 | C | 26 | C | 27 | U | 28 | * | A | 54 | U | 55 | A | 56 | A | 57 | G | 58 | C | 59 | cWW | tSW | ncWB | cWW | cSW | cWW | cSW | ncSH | ncSH |
2 | IL_5TBW_373 | 5TBW | 0.0000 | 0 | Minor groove platform related | AS | 5S rRNA | G | 21 | A | 22 | A | 23 | A | 24 | G | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | ncWW | cSW | cWW | cSW | ncSH | ncSH | ||
3 | IL_8C3A_144 | 8C3A | 0.0868 | 0 | Minor groove platform related | 3 | 5S rRNA | G | 21 | A | 22 | A | 23 | A | 24 | G | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | cWW | ncSW | cWW | ncSH | ncSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAAAGCA*UUAAGC | 2 |
GGUUGCCU*AUAAGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAAGC*UAAG | 2 |
GUUGCC*UAAG | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform related (3)
- Basepair signature
- cWW-L-R-L-cSH-cSW-L-R-L-cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.34 | Max 0.73
Coloring options: