Motif IL_11167.1 Version IL_11167.1 of this group appears in releases 0.2 to 0.3
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-2 | 1-14 | 2-13 | 3-12 | 4-11 | 5-10 | 6-9 | 7-8 | 8-9 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2NZ4_006 | 2NZ4 | 0.7561 | 1 | Q | glmS ribozyme | U | 96 | G | 126 | * | A | 98 | A | 99 | A | 100 | U | 101 | C | 102 | G | 119 | G | 120 | A | 121 | C | 122 | A | 123 | A | 124 | A | 125 | cWW | tHW | tHW | cBW | cWW | ||||
| 2 | IL_1S72_069 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | U | 1907 | G | 1908 | * | A | 1909 | A | 1910 | C | 1911 | A | 1912 | C | 1913 | G | 1926 | A | 1927 | C | 1928 | G | 1929 | A | 1930 | A | 1931 | G | 1932 | cWW | tSH | ncWw | cWW | |||||
| 3 | IL_2NZ4_003 | 2NZ4 | 0.5059 | 1 | P | glmS ribozyme | G | 119 | G | 120 | * | A | 121 | C | 122 | A | 123 | A | 124 | A | 125 | U | 96 | G | 126 | A | 98 | A | 99 | A | 100 | U | 101 | C | 102 | cWW | cWB | tWH | tWH | cWW | ||||
| 4 | IL_2NZ4_009 | 2NZ4 | 1.1040 | 1 | R | glmS ribozyme | U | 96 | G | 126 | * | A | 98 | A | 99 | A | 100 | U | 101 | C | 102 | G | 119 | G | 120 | A | 121 | C | 122 | A | 123 | A | 124 | A | 125 | cWW | tHW | tHW | cBW | cWW | ||||
| 5 | IL_2NZ4_013 | 2NZ4 | 1.1062 | 1 | S | glmS ribozyme | G | 119 | G | 120 | * | A | 121 | C | 122 | A | 123 | A | 124 | A | 125 | U | 96 | G | 126 | A | 98 | A | 99 | A | 100 | U | 101 | C | 102 | cWW | cWB | tWH | tWH | cWW | ||||
| 6 | IL_2OIU_002 | 2OIU | 1.2623 | 0 | P | L1 Ribozyme RNA Ligase | C | 21 | G | 22 | * | A | 23 | C | 24 | C | 25 | A | 26 | G | 27 | C | 34 | U | 35 | C | 36 | U | 37 | U | 38 | A | 39 | G | 40 | cWW | tSH | ncwW | cWW | cWW | ||||
| 7 | IL_2QBZ_005 | 2QBZ | 1.2753 | 0 | X | M-box riboswitch (ykoK leader) | A | 60 | A | 61 | * | A | 62 | A | 63 | A | 64 | U | 65 | G | 66 | C | 75 | G | 76 | C | 77 | C | 78 | A | 79 | A | 80 | U | 81 | cWW | tSH | ntHS | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAAUC*GGACAAAG | 2 |
| GGACAAAG*UUAAAUC | 2 |
| UGAACAC*GACGAAG | 1 |
| CGACCAG*CUCUUAG | 1 |
| AAAAAUG*CGCCAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAAU*GACAAA | 2 |
| GACAAA*UAAAU | 2 |
| GAACA*ACGAA | 1 |
| GACCA*UCUUA | 1 |
| AAAAU*GCCAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_11167.1 | Only in the parent motif |
|---|---|---|---|
| IL_22243.1 Compare | IL_2NZ4_006, IL_2NZ4_013, IL_2NZ4_003, IL_2NZ4_009 | IL_1S72_069, IL_2OIU_002, IL_2QBZ_005 | |
| IL_54308.1 Compare | IL_1S72_069, IL_2OIU_002, IL_2QBZ_005 | IL_2NZ4_006, IL_2NZ4_013, IL_2NZ4_003, IL_2NZ4_009 |
Children motifs
| Child motif | Common motif instances | Only in IL_11167.1 | Only in the child motif |
|---|---|---|---|
| IL_11167.2 Compare | IL_2NZ4_006, IL_2NZ4_013, IL_2NZ4_003, IL_2QBZ_005, IL_2NZ4_009 | IL_1S72_069, IL_2OIU_002 | |
| IL_44310.1 Compare | IL_1S72_069 | IL_2NZ4_006, IL_2OIU_002, IL_2NZ4_013, IL_2NZ4_003, IL_2QBZ_005, IL_2NZ4_009 | |
| IL_90238.1 Compare | IL_2OIU_002 | IL_2NZ4_006, IL_2NZ4_013, IL_2NZ4_003, IL_2QBZ_005, IL_2NZ4_009, IL_1S72_069 | IL_1LNG_003 |
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