#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-3
1 IL_3MOJ_0043MOJ0.98060Single stack bendA LSU rRNAU2522G2523*C2540A2541A2542cWWcWW
2 IL_2ZJR_1012ZJR0.88212Decoding loop related (H)X LSU rRNAG2846C2849*G2818G2819C2820cWWcWW
3 IL_3F1H_0053F1H0.89080A23S RRNAC183C184*G212A213G214cWWcWW
4 IL_3F1H_0883F1H0.89280A23S RRNAA2453G2454*C2498C2499U2500cWWcWW
5 IL_3F1H_0233F1H0.89250A23S RRNAC837C838*G940A941G942cWWcWW
6 IL_2ZJR_0442ZJR0.84711Intercalated cWW (H)X LSU rRNAU1232C1234*G1241A1242G1243cWWcWW
7 IL_2QWY_0082QWY0.78740Single stack bendCSAM-II riboswitchU21G22*C43U44A45cWWcWW
8 IL_2QEK_0022QEK0.72872B+AHIV-1 subtype F DIS genomic RNAG7G10*C15A16C17cWWcWW
9 IL_2O3X_0032O3X0.71512Decoding loop relatedA+BRNA (23-mer)G16G19*C30A31C32cWWcWW
10 IL_2O3X_0012O3X0.65951Stack and bulgeA+BRNA (23-mer)G5C7*G42U43C44cWWcWW
11 IL_2O3X_0022O3X0.71252Decoding loop relatedB+ARNA (23-mer)G39G42*C7A8C9cWWcWW
12 IL_2ZJR_0212ZJR0.84500Single stack bend (H)X LSU rRNAC850C851*G951A952G953cWWcWW
13 IL_2ZJR_0842ZJR0.85770X LSU rRNAA2432G2433*C2477C2478U2479cWWcWW
14 IL_2QWY_0022QWY0.73170ASAM-II riboswitchU21G22*C43U44A45cWWcWW
15 IL_1ZX7_0051ZX70.55282Decoding loop relatedE+FRNA (15-mer) + RNA (14-mer)G7G10*C26A27C28cWWcWW
16 IL_1ZX7_0071ZX70.62892G+HRNA (15-mer) + RNA (14-mer)G7G10*C26A27C28cWWcWW
17 IL_2QWY_0052QWY0.76650BSAM-II riboswitchU21G22*C43U44A45cWWcWW
18 IL_1ZX7_0011ZX70.52982A+BRNA (15-mer) + RNA (14-mer)G7G10*C26A27C28cWWcWW
19 IL_1S72_0791S720.48310Single stack bend (H)0 LSU rRNAC2454A2455*U2436A2437G2438cWWcWW
20 IL_1MWL_0021MWL0.39812B+ARNA (22-mer)G37G40*C6A7C8cWWcWW
21 IL_1O9M_0021O9M0.42272B+AEUBACTERIAL A-SITEG1491G1494*C1407A1408C1409cWWcWW
22 IL_1MWL_0031MWL0.40092A+BRNA (22-mer)G15G18||A*C28A29C30cWWcWW
23 IL_1O9M_0011O9M0.40891A+BEUBACTERIAL A-SITEG1405C1407*G1494U1495C1496cWWcWW
24 IL_1FJG_0571FJG0.34592A SSU rRNAG1491G1494*C1407A1408C1409cWWcWW
25 IL_1S72_0051S720.43460Single stack bend (H)0 LSU rRNAC153C154*G182A183G184cWWcWW
26 IL_1T0E_0011T0E0.49392Decoding loop relatedA+CRNA (18-mer) + RNA (17-mer)G7G10||A*C16A17C18cWWcWW
27 IL_1FJG_0461FJG0.00000A SSU rRNAG1127C1128*G1143G1144C1145ncWWcWW
28 IL_1ZX7_0031ZX70.53972Decoding loop relatedC+DRNA (15-mer) + RNA (14-mer)G7G10*C26A27C28cWWcWW
29 IL_2ZJR_0552ZJR0.85170Single stack bend (H)X LSU rRNAC1477U1478*A1463A1464G1465cWWcWW
30 IL_2ZJR_0052ZJR0.83770Single stack bend (H)X LSU rRNAC160U161*A189A190G191cWWcWW
31 IL_3G78_0123G780.91180AGroup II catalytic intron D1-D4-1G320G321*C296A297U298cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAG*CAC12
CC*GAG4
UG*CUA3
AG*CCU2
GUC*GUC2
CU*AAG2
UG*CAA1
GGAC*GGC1
UAC*GAG1
CA*UAG1
GC*GGC1
GG*CAU1
Non-Watson-Crick part of the motif
SequenceCounts
AA*A12
*A9
*U3
*C2
U*U2
GA*G1
A*A1
*G1

Release history

Release0.20.3
Date2011-12-082011-12-08
Status> 2 parentsExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_11363.1Only in the parent motif
IL_53935.1
Compare
IL_2ZJR_055, IL_2QWY_008, IL_2QWY_005, IL_1O9M_002, IL_2QWY_002, IL_1O9M_001, IL_1S72_005, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_003, IL_3MOJ_004, IL_1ZX7_001, IL_1S72_079, IL_1T0E_001, IL_1FJG_057, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005IL_3F1H_088, IL_2ZJR_101, IL_3G78_012, IL_2ZJR_084, IL_2QEK_002, IL_1FJG_046IL_2ZJR_023, IL_1S72_062, IL_2ZJR_063, IL_3F1H_064
IL_92985.1
Compare
IL_2ZJR_084, IL_3G78_012, IL_3F1H_088IL_2ZJR_055, IL_2QWY_008, IL_2QEK_002, IL_2QWY_005, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_1S72_005, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_003, IL_3MOJ_004, IL_1ZX7_001, IL_1S72_079, IL_1T0E_001, IL_1FJG_057, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005, IL_2ZJR_101IL_2ZJR_067, IL_3F1H_068, IL_3F1H_056
IL_18861.1
Compare
IL_2ZJR_101IL_2ZJR_055, IL_3F1H_088, IL_2QWY_008, IL_2QEK_002, IL_2QWY_005, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_1T0E_001, IL_1S72_005, IL_2ZJR_084, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_003, IL_3G78_012, IL_3MOJ_004, IL_1S72_079, IL_1ZX7_001, IL_1FJG_057, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005IL_3F1H_106, IL_1LNG_001
IL_19813.1
Compare
IL_2QEK_002IL_2ZJR_055, IL_3F1H_088, IL_2QWY_008, IL_2QWY_005, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_1T0E_001, IL_1S72_005, IL_2ZJR_084, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_003, IL_3G78_012, IL_3MOJ_004, IL_1S72_079, IL_1ZX7_001, IL_1FJG_057, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005, IL_2ZJR_101IL_3MUR_001, IL_3F1H_030, IL_1S72_053
IL_19775.1
Compare
IL_1FJG_046IL_2ZJR_055, IL_3F1H_088, IL_2QWY_008, IL_2QEK_002, IL_2QWY_005, IL_1O9M_002, IL_2QWY_002, IL_1O9M_001, IL_1T0E_001, IL_1S72_005, IL_2ZJR_084, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_003, IL_3G78_012, IL_3MOJ_004, IL_1S72_079, IL_1ZX7_001, IL_1FJG_057, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005, IL_2ZJR_101IL_1FJG_039, IL_1S72_066

Children motifs

Child motifCommon motif instancesOnly in IL_11363.1Only in the child motif
IL_11363.2
Compare
IL_2ZJR_055, IL_3F1H_088, IL_2QWY_008, IL_2QWY_005, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_1S72_005, IL_2ZJR_084, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_001, IL_3G78_012, IL_3MOJ_004, IL_1S72_079, IL_1ZX7_003, IL_1T0E_001, IL_1FJG_057, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005IL_2ZJR_101, IL_2QEK_002IL_1FJG_012
IL_71234.1
Compare
IL_2ZJR_101, IL_2QEK_002IL_2ZJR_055, IL_3F1H_088, IL_2QWY_008, IL_2QWY_005, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_1T0E_001, IL_1S72_005, IL_2ZJR_084, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_003, IL_3G78_012, IL_3MOJ_004, IL_1S72_079, IL_1ZX7_001, IL_1FJG_057, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005IL_3F1H_106, IL_1LNG_001
Annotations
  • (16)
  • Single stack bend (H) (5)
  • Decoding loop related (5)
  • Single stack bend (2)
  • Stack and bulge (1)
  • Intercalated cWW (H) (1)
  • Decoding loop related (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.09 | Avg 0.56 | Max 1.09
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