Motif IL_11411.1 Version IL_11411.1 of this group appears in releases 4.0 to 4.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 5-6 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8CRE_421 | 8CRE | 0.2223 | 0 | SSU/LSU pseudoknot | CM | SSU rRNA | A | 548 | G | 549 | G | 550 | G | 551 | C | 552 | A | 553 | A | 554 | G | 555 | * | C | 585 | U | 586 | cWW | ncSH | cWW |
| 2 | IL_8GLP_221 | 8GLP | 0.2154 | 0 | SSU/LSU pseudoknot (H) | S2 | SSU rRNA | A | 599 | G | 600 | OMG | 601 | G | 602 | C | 603 | A | 604 | A | 605 | G | 606 | * | C | 636 | U | 637 | cWW | cSH | cWW |
| 3 | IL_8P9A_402 | 8P9A | 0.2272 | 0 | SSU/LSU pseudoknot | sR | SSU rRNA | A | 550 | G | 551 | G | 552 | G | 553 | C | 554 | A | 555 | A | 556 | G | 557 | * | C | 587 | U | 588 | cWW | cSH | cWW |
| 4 | IL_4LFB_020 | 4LFB | 0.2366 | 0 | SSU/LSU pseudoknot | A | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | C | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | cSH | cWW |
| 5 | IL_8B0X_023 | 8B0X | 0.1964 | 0 | SSU/LSU pseudoknot (H) | A | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | U | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | ncSH | cWW |
| 6 | IL_9E6Q_043 | 9E6Q | 0.1360 | 0 | SSU/LSU pseudoknot (H) | 1 | LSU rRNA | C | 1124 | C | 1125 | C | 1126 | C | 1127 | C | 1128 | A | 1129 | A | 1130 | G | 1131 | * | C | 1276 | G | 1277 | cWW | cSH | cWW |
| 7 | IL_4V9F_038 | 4V9F | 0.1181 | 0 | SSU/LSU pseudoknot | 0 | LSU rRNA | U | 1101 | C | 1102 | C | 1103 | C | 1104 | C | 1105 | A | 1106 | A | 1107 | G | 1108 | * | C | 1254 | A | 1255 | cWW | cSH | cWW |
| 8 | IL_9DFE_036 | 9DFE | 0.0000 | 0 | SSU/LSU pseudoknot | 1A | LSU rRNA | C | 1004 | C | 1005 | C | 1006 | C | 1007 | C | 1008 | A | 1009 | A | 1010 | G | 1011 | * | C | 1150 | G | 1151 | cWW | cSH | cWW |
| 9 | IL_8GLP_076 | 8GLP | 0.1303 | 0 | L5 | LSU rRNA | C | 1911 | G | 1912 | C | 1913 | C | 1914 | C | 1915 | G | 1916 | A | 1917 | U | 1918 | * | G | 2064 | G | 2065 | cWW | cWW | ||
| 10 | IL_4WF9_037 | 4WF9 | 0.1720 | 0 | SSU/LSU pseudoknot | X | LSU rRNA | U | 1048 | C | 1049 | C | 1050 | C | 1051 | A | 1052 | A | 1053 | A | 1054 | A | 1055 | * | U | 1194 | A | 1195 | cWW | ncSH | cWW |
| 11 | IL_8B0X_098 | 8B0X | 0.1641 | 0 | a | LSU rRNA | U | 1006 | C | 1007 | C | 1008 | C | 1009 | A | 1010 | A | 1011 | A | 1012 | G | 1013 | * | C | 1152 | A | 1153 | cWW | ncSH | cWW | |
| 12 | IL_7A0S_034 | 7A0S | 0.1855 | 0 | SSU/LSU pseudoknot | X | LSU rRNA | U | 1015 | C | 1016 | C | 1017 | C | 1018 | U | 1019 | A | 1020 | A | 1021 | A | 1022 | * | U | 1161 | A | 1162 | cWW | ncSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGGGCAAG*CU | 2 |
| CCCCCAAG*CG | 2 |
| AGGCAAG*CU | 1 |
| CGGCCAAC*GG | 1 |
| CGGCUAAC*GG | 1 |
| UCCCCAAG*CA | 1 |
| CGCCCGAU*GG | 1 |
| UCCCAAAA*UA | 1 |
| UCCCAAAG*CA | 1 |
| UCCCUAAA*UA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCCCAA* | 3 |
| GGGCAA* | 2 |
| CCCAAA* | 2 |
| G(OMG)GCAA* | 1 |
| GGCCAA* | 1 |
| GGCUAA* | 1 |
| GCCCGA* | 1 |
| CCCUAA* | 1 |
- Annotations
-
- SSU/LSU pseudoknot (7)
- SSU/LSU pseudoknot (H) (3)
- (2)
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Heat map statistics
- Min 0.07 | Avg 0.19 | Max 0.32
Coloring options: