Motif IL_11594.1 Version IL_11594.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_084 | 1S72 | 0.7041 | 0 | Major groove platform (H) | 0 | LSU rRNA | C | 2542 | G | 2543 | * | U | 2615 | G | 2616 | G | 2617 | cWW | cWW | nchH |
| 2 | IL_3U5H_113 | 3U5H | 0.0000 | 0 | 5 | LSU rRNA | C | 2876 | G | 2877 | * | U | 2949 | G | 2950 | G | 2951 | cWW | cWW | nchH | |
| 3 | IL_3UXR_069 | 3UXR | 0.0933 | 1 | A | LSU rRNA | U | 1841 | G | 1842 | * | U | 1898 | G | 1899 | A | 1901 | cWW | cWW | ||
| 4 | IL_1S72_081 | 1S72 | 0.3923 | 0 | Major groove platform (H) | 0 | LSU rRNA | U | 2528 | G | 2529 | * | U | 2492 | C | 2493 | G | 2494 | cWW | cWW | cHH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGG | 2 |
| UG*UGAA | 1 |
| UG*UCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 2 |
| *GA | 1 |
| *C | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_11594.1 | Only in the parent motif |
|---|---|---|---|
| IL_55113.2 Compare | IL_1S72_081, IL_1S72_084 | IL_3UXR_069, IL_3U5H_113 | IL_3PYO_084 |
Children motifs
| Child motif | Common motif instances | Only in IL_11594.1 | Only in the child motif |
|---|---|---|---|
| IL_08926.1 Compare | IL_1S72_081, IL_3U5H_113, IL_1S72_084 | IL_3UXR_069 | IL_3V2F_069, IL_3U5H_110, IL_3V2F_093 |
- Annotations
-
- Major groove platform (H) (2)
- (2)
- Basepair signature
- 05_cWW-cWW--cHH
- Heat map statistics
- Min 0.09 | Avg 0.38 | Max 0.78
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