Motif IL_12204.2 Version IL_12204.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-8 | 5-9 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_057 | 4CUV | 0.1352 | 4 | 1 | 25S RRNA | C | 1187 | U | 1188 | C | 1189 | A | 1190 | A | 1193 | G | 1194 | * | C | 1314 | U | 1315 | A | 1317 | G | 1319 | cWW | tWW | ntWW | ntWH | cWW |
| 2 | IL_3U5H_056 | 3U5H | 0.0000 | 4 | 5 | 25S rRNA | C | 1187 | U | 1188 | C | 1189 | A | 1190 | A | 1193 | G | 1194 | * | C | 1314 | U | 1315 | A | 1317 | G | 1319 | cWW | tWW | tWW | ncWB | cWW |
| 3 | IL_4A1B_057 | 4A1B | 0.4281 | 4 | 1 | 26S RRNA | C | 1214 | U | 1215 | C | 1216 | A | 1217 | A | 1220 | G | 1221 | * | C | 1341 | U | 1342 | A | 1344 | G | 1346 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCAUCAG*CUCAAG | 2 |
| CUCAUCAG*CUGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAUCA*UCAA | 2 |
| UCAUCA*UGAA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_12204.2 | Only in the parent motif |
|---|---|---|---|
| IL_12204.1 Compare | IL_4A1B_057, IL_3U5H_056 | IL_4CUV_057 |
Children motifs
| Child motif | Common motif instances | Only in IL_12204.2 | Only in the child motif |
|---|---|---|---|
| IL_40053.1 Compare | IL_4CUV_057, IL_4A1B_057, IL_3U5H_056 | IL_1VWW_082, IL_1VX2_018, IL_1VX6_059 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tWW-L-tWW-tWH-cWW
- Heat map statistics
- Min 0.14 | Avg 0.22 | Max 0.44
Coloring options: