Motif IL_12211.1 Version IL_12211.1 of this group appears in releases 0.6 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-4 | 2-11 | 5-8 | 5-11 | 6-7 | 6-10 | 7-9 | 8-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_100 | 1S72 | 0.0000 | 2 | 9 | 5S rRNA | G | 21 | G | 22 | G | 25 | C | 26 | C | 27 | U | 28 | * | A | 54 | U | 55 | A | 56 | A | 57 | G | 58 | C | 59 | cWW | ntSW | ncWB | cWW | cSW | cWW | ntSW | ncSH | ||
| 2 | IL_3U5H_144 | 3U5H | 0.7400 | 1 | 7 | 5S rRNA | G | 21 | A | 23 | A | 24 | G | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | cWW | cSW | cWW | ncSW | ncSH | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUGCCU*AUAAGC | 1 |
| GAAAGCA*UUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUGCC*UAAG | 1 |
| AAAGC*UAAG | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_12211.1 | Only in the parent motif |
|---|---|---|---|
| IL_00209.1 Compare | IL_1S72_100 | IL_3U5H_144 |
Children motifs
| Child motif | Common motif instances | Only in IL_12211.1 | Only in the child motif |
|---|---|---|---|
| IL_12211.2 Compare | IL_1S72_100, IL_3U5H_144 | IL_4CUV_151 |
- Annotations
- Basepair signature
- cWW-L-R-R-R-L-L-cWW-cWW
- Heat map statistics
- Min 0.74 | Avg 0.37 | Max 0.74
Coloring options: