Motif IL_12566.5 Version IL_12566.5 of this group appears in releases 4.0 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 5-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8GLP_317 | 8GLP | 0.8756 | 2 | L5 | LSU rRNA | A | 4624 | C | 4625 | A | 4626 | U | 4627 | PSU | 4628 | U | 4629 | * | A | 4669 | A | 4672 | PSU | 4673 | cWW | cWW | tHH | ncWS | cWW |
| 2 | IL_4V9F_059 | 4V9F | 0.2301 | 1 | 0 | LSU rRNA | G | 1728 | A | 1729 | C | 1731 | A | 1732 | A | 1733 | C | 1734 | * | G | 2045 | G | 2046 | C | 2047 | cWW | ncWW | tHS | cWW | |
| 3 | IL_7A0S_059 | 7A0S | 0.0842 | 0 | X | LSU rRNA | G | 1668 | A | 1669 | G | 1670 | A | 1671 | A | 1672 | C | 1673 | * | G | 1987 | A | 1988 | C | 1989 | cWW | tHS | cWW | ||
| 4 | IL_8B0X_123 | 8B0X | 0.0000 | 0 | a | LSU rRNA | G | 1653 | A | 1654 | G | 1655 | A | 1656 | A | 1657 | C | 1658 | * | G | 2008 | A | 2009 | C | 2010 | cWW | tHS | cWW | ||
| 5 | IL_9DFE_063 | 9DFE | 0.0773 | 0 | 1A | LSU rRNA | G | 1651 | A | 1652 | G | 1653 | A | 1654 | A | 1655 | C | 1656 | * | G | 2004 | A | 2005 | C | 2006 | cWW | tHS | cWW | ||
| 6 | IL_4WF9_062 | 4WF9 | 0.1153 | 0 | X | LSU rRNA | G | 1695 | C | 1696 | G | 1697 | A | 1698 | A | 1699 | C | 1700 | * | G | 2031 | A | 2032 | C | 2033 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAAC*GAC | 3 |
| ACAU(PSU)U*ACCA(PSU) | 1 |
| GAGCAAC*GGC | 1 |
| GCGAAC*GAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAA*A | 3 |
| CAU(PSU)*CCA | 1 |
| AGCAA*G | 1 |
| CGAA*A | 1 |
- Annotations
-
- (6)
- Basepair signature
- cWW-L-tHS-L-cWW-L
- Heat map statistics
- Min 0.08 | Avg 0.33 | Max 0.90
Coloring options: