Motif IL_12849.1 Version IL_12849.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | 3-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VX2_063 | 1VX2 | 0.7557 | 0 | 2 | 18S ribosomal RNA | C | 1373 | C | 1374 | G | 1375 | * | C | 1363 | U | 1364 | G | 1365 | G | 1366 | ncWW | ncWW | ncSW | |||
| 2 | IL_2AW7_006 | 2AW7 | 0.5160 | 0 | A | 16S ribosomal RNA | C | 67 | G | 68 | G | 69 | * | C | 99 | G | 100 | A | 101 | G | 102 | cWW | cWW | cWW | tSH | ||
| 3 | IL_4CUX_005 | 4CUX | 0.5515 | 0 | 2 | 18S RRNA | C | 427 | A | 428 | G | 429 | * | C | 50 | A | 51 | U | 52 | G | 53 | ncWW | cWW | ||||
| 4 | IL_3U5F_028 | 3U5F | 0.5804 | 0 | 6 | 18S rRNA | G | 516 | U | 517 | A | 518 | * | U | 533 | A | 534 | A | 535 | C | 536 | cWW | ncWW | cWW | tSH | ||
| 5 | IL_3BNL_003 | 3BNL | 0.5291 | 0 | B+A | A site of bacterial ribosome | C | 6 | A | 7 | C | 8 | * | G | 15 | A | 16 | A | 17 | G | 18 | cWW | cwW | cWW | |||
| 6 | IL_3J7A_058 | 3J7A | 0.1459 | 3 | Minor groove platform with extra cWW (H) | A | SSU rRNA | U | 1377 | G | 1378 | G | 1379 | * | U | 1676 | G | 1679 | U | 1680 | A | 1682 | cWW | ncWB | cWW | tSH | |
| 7 | IL_3U5F_068 | 3U5F | 0.0000 | 3 | 6 | 18S rRNA | U | 1276 | G | 1277 | G | 1278 | * | U | 1430 | G | 1433 | U | 1434 | A | 1436 | cWW | ncWWa | cWW | tSH | ||
| 8 | IL_4BPP_066 | 4BPP | 0.1153 | 3 | A | 18S RRNA | U | 1248 | G | 1249 | G | 1250 | * | U | 1401 | G | 1404 | U | 1405 | A | 1407 | cWW | ncWB | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*UCUGUGA | 3 |
| CUGG*CCG | 1 |
| CGG*CGAG | 1 |
| CAG*CAUG | 1 |
| GUA*UAAC | 1 |
| CAC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*CUGUG | 3 |
| UG*C | 1 |
| G*GA | 1 |
| A*AU | 1 |
| U*AA | 1 |
| A*AA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_12849.1 | Only in the parent motif |
|---|---|---|---|
| IL_90133.5 Compare | IL_4CUX_005, IL_4BPP_066, IL_3U5F_028, IL_2AW7_006, IL_3U5F_068 | IL_3J7A_058, IL_1VX2_063, IL_3BNL_003 | IL_4N0T_004 |
| IL_72367.1 Compare | IL_3BNL_003 | IL_4BPP_066, IL_3U5F_028, IL_4CUX_005, IL_1VX2_063, IL_3U5F_068, IL_3J7A_058, IL_2AW7_006 |
Children motifs
| Child motif | Common motif instances | Only in IL_12849.1 | Only in the child motif |
|---|---|---|---|
| IL_12849.2 Compare | IL_4BPP_066, IL_3U5F_028, IL_4CUX_005, IL_3BNL_003, IL_3U5F_068, IL_3J7A_058, IL_2AW7_006 | IL_1VX2_063 | IL_4W23_063 |
- Annotations
-
- (7)
- Minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-cWW-tSH-cWW
- Heat map statistics
- Min 0.12 | Avg 0.46 | Max 0.79
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