Motif IL_13468.1 Version IL_13468.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 2-5 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_008 | 1S72 | 0.0000 | 0 | Major groove platform; stack outside cWW (H) | 0 | LSU rRNA | C | 245 | G | 246 | A | 247 | A | 248 | * | U | 265 | G | 266 | cWW | tSH | cWW |
| 2 | IL_2ZJR_062 | 2ZJR | 0.2598 | 0 | X | LSU rRNA | G | 1683 | G | 1684 | A | 1685 | A | 1686 | * | U | 1976 | C | 1977 | cWW | tSH | cWW | |
| 3 | IL_1S72_061 | 1S72 | 0.2616 | 0 | 0 | LSU rRNA | G | 1744 | G | 1745 | A | 1746 | A | 1747 | * | U | 2034 | C | 2035 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAA*UC | 2 |
| CGAA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA* | 3 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_13468.1 | Only in the parent motif |
|---|---|---|---|
| IL_30798.2 Compare | IL_1S72_061, IL_1S72_008, IL_2ZJR_062 | IL_2ZJR_022, IL_2ZJR_046, IL_1S72_050, IL_3D0U_004, IL_3F1H_063, IL_1G1X_001, IL_1F7Y_001, IL_1FJG_027, IL_3F1H_048, IL_3DIR_004 |
Children motifs
- Annotations
-
- (2)
- Major groove platform; stack outside cWW (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.10 | Avg 0.14 | Max 0.26
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