Motif IL_15840.1 Version IL_15840.1 of this group appears in releases 0.6 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-9 | 2-10 | 3-8 | 4-7 | 5-6 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_066 | 2AW7 | 0.2753 | 0 | A | 16S ribosomal RNA | C | 1466 | C | 1467 | A | 1468 | C | 1469 | U | 1470 | * | A | 1430 | A | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | cWW | ntSH | tHS | tHS | cWW | ||
| 2 | IL_4A1B_030 | 4A1B | 0.0000 | 0 | 1 | 26S RRNA | C | 751 | C | 752 | A | 753 | A | 754 | G | 755 | * | U | 764 | A | 765 | G | 766 | C | 767 | A | 768 | G | 769 | cWW | ntSH | tHS | tHS | cWW | ||
| 3 | IL_1FJG_026 | 1FJG | 0.9167 | 3 | A | SSU rRNA | U | 605 | G | 606 | G | 610 | A | 611 | C | 612 | * | G | 628 | G | 629 | G | 630 | G | 631 | A | 632 | G | 633 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCACU*AAGAAG | 1 |
| CCAAG*UAGCAG | 1 |
| UGAAAGAC*GGGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAC*AGAA | 1 |
| CAA*AGCA | 1 |
| GAAAGA*GGGA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_15840.1 | Only in the parent motif |
|---|---|---|---|
| IL_28399.1 Compare | IL_1FJG_026 | IL_4A1B_030, IL_2AW7_066 | IL_1S72_019, IL_3PYO_058 |
| IL_63867.1 Compare | IL_2AW7_066 | IL_1FJG_026, IL_4A1B_030 |
Children motifs
| Child motif | Common motif instances | Only in IL_15840.1 | Only in the child motif |
|---|---|---|---|
| IL_15840.2 Compare | IL_2AW7_066, IL_4A1B_030 | IL_1FJG_026 | |
| IL_93568.1 Compare | IL_1FJG_026 | IL_4A1B_030, IL_2AW7_066 | IL_4A1B_033, IL_2ZJR_017, IL_4GMA_004 |
- Annotations
- Basepair signature
- cWW-tSH-R-tHS-tHS-cWW
- Heat map statistics
- Min 0.28 | Avg 0.48 | Max 0.98
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