Motif IL_15840.2 Version IL_15840.2 of this group appears in releases 0.9 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_066 | 2AW7 | 0.0000 | 0 | A | 16S ribosomal RNA | A | 1430 | A | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | * | C | 1466 | C | 1467 | A | 1468 | C | 1469 | U | 1470 | cWW | tSH | tSH | ntHS | cWW | ||
| 2 | IL_4A1B_030 | 4A1B | 0.2753 | 0 | 1 | 26S RRNA | U | 764 | A | 765 | G | 766 | C | 767 | A | 768 | G | 769 | * | C | 751 | C | 752 | A | 753 | A | 754 | G | 755 | cWW | tSH | tSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAGAAG*CCACU | 1 |
| UAGCAG*CCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAA*CAC | 1 |
| AGCA*CAA | 1 |
Release history
| Release | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_15840.2 | Only in the parent motif |
|---|---|---|---|
| IL_15840.1 Compare | IL_2AW7_066, IL_4A1B_030 | IL_1FJG_026 |
Children motifs
| Child motif | Common motif instances | Only in IL_15840.2 | Only in the child motif |
|---|---|---|---|
| IL_25541.1 Compare | IL_4A1B_030 | IL_2AW7_066 | IL_1VW3_086 |
| IL_46151.1 Compare | IL_2AW7_066 | IL_4A1B_030 |
- Annotations
- Basepair signature
- cWW-tSH-tSH-L-R-L-cWW
- Heat map statistics
- Min 0.28 | Avg 0.14 | Max 0.28
Coloring options: