Motif IL_16207.1 Version IL_16207.1 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-6 | 1-7 | 2-5 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_104 | 3U5H | 0.2427 | 1 | 5 | 25S rRNA | C | 2666 | A | 2667 | U | 2668 | * | A | 2686 | G | 2687 | A | 2689 | G | 2690 | cWW | tHS | cWW | ||
| 2 | IL_4IOA_082 | 4IOA | 0.2273 | 1 | Isolated tHS basepair with bulges | X | LSU rRNA | C | 2276 | A | 2277 | A | 2278 | * | U | 2296 | G | 2297 | A | 2299 | G | 2300 | cWW | ntHS | cWW | |
| 3 | IL_4A1B_102 | 4A1B | 0.1783 | 1 | 1 | 26S RRNA | C | 2655 | A | 2656 | G | 2657 | * | C | 2675 | G | 2676 | A | 2678 | G | 2679 | cWW | tHS | cWW | ||
| 4 | IL_1S72_078 | 1S72 | 0.0000 | 1 | 0 | LSU rRNA | C | 2331 | A | 2332 | G | 2333 | * | C | 2351 | G | 2352 | A | 2354 | G | 2355 | cWW | tHS | cWW | ||
| 5 | IL_2QBG_087 | 2QBG | 0.7525 | 1 | B | 23S rRNA | A | 2297 | A | 2298 | U | 2299 | * | A | 2317 | G | 2318 | G | 2319 | U | 2321 | tHS | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAU*AGUAG | 1 |
| CAA*UGUAG | 1 |
| CAG*CGUAG | 1 |
| CAG*CGAAG | 1 |
| AAU*AGGUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GUA | 3 |
| A*GAA | 1 |
| A*GGU | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_16207.1 | Only in the parent motif |
|---|---|---|---|
| IL_10007.2 Compare | IL_2QBG_087, IL_1S72_078, IL_4A1B_102 | IL_3U5H_104, IL_4IOA_082 | IL_3V7E_007, IL_3GX5_003, IL_4B5R_003, IL_4AOB_003 |
| IL_53774.1 Compare | IL_3U5H_104 | IL_2QBG_087, IL_4A1B_102, IL_1S72_078, IL_4IOA_082 | IL_2ZJR_081, IL_3V2F_085 |
Children motifs
| Child motif | Common motif instances | Only in IL_16207.1 | Only in the child motif |
|---|---|---|---|
| IL_37104.1 Compare | IL_3U5H_104, IL_4A1B_102, IL_1S72_078, IL_4IOA_082 | IL_2QBG_087 | IL_2QBG_082, IL_3V2F_079, IL_4BPP_026, IL_4IOA_077, IL_3U5H_100, IL_1S72_076, IL_3V2F_012 |
| IL_06421.1 Compare | IL_2QBG_087 | IL_3U5H_104, IL_4A1B_102, IL_1S72_078, IL_4IOA_082 |
- Annotations
-
- (4)
- Isolated tHS basepair with bulges (1)
- Basepair signature
- cWW-R-tHS-cWW
- Heat map statistics
- Min 0.18 | Avg 0.37 | Max 0.89
Coloring options: