Motif IL_16614.1 Version IL_16614.1 of this group appears in releases 0.5 to 0.5
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 1-18 | 2-17 | 3-16 | 4-15 | 6-13 | 7-12 | 8-11 | 9-10 | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_364D_003 | 364D | 0.0000 | 0 | Bacterial 5S Loop E | B+C | RNA (19-mer) + RNA (31-mer) | C | 71 | G | 72 | A | 73 | U | 74 | G | 75 | G | 76 | U | 77 | A | 78 | G | 79 | * | C | 97 | G | 98 | A | 99 | G | 100 | A | 101 | G | 102 | U | 103 | A | 104 | G | 105 | cWW | tSH | tHW | ntHW | cWB | ntWH | tHS | cWW |
2 | IL_2ZJR_106 | 2ZJR | 0.2665 | 0 | Bacterial 5S Loop E (H) | Y | 5S rRNA | C | 73 | A | 74 | A | 75 | U | 76 | G | 77 | A | 78 | U | 79 | A | 80 | C | 81 | * | G | 100 | A | 101 | A | 102 | A | 103 | A | 104 | G | 105 | U | 106 | C | 107 | G | 108 | cWW | tSH | tHW | tHW | ncWB | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGAUGGUAG*CGAGAGUAG | 1 |
CAAUGAUAC*GAAAAGUCG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAUGGUA*GAGAGUA | 1 |
AAUGAUA*AAAAGUC | 1 |
Release history
Release | 0.5 |
---|---|
Date | 2011-12-08 |
Status | New id, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_16614.1 | Only in the parent motif |
---|---|---|---|
IL_98756.1 Compare | IL_364D_003, IL_2ZJR_106 | IL_3F1H_112, IL_1DFU_001, IL_1FEU_002, IL_1FEU_001 |
Children motifs
Child motif | Common motif instances | Only in IL_16614.1 | Only in the child motif |
---|---|---|---|
IL_25230.1 Compare | IL_364D_003, IL_2ZJR_106 | IL_1DFU_001, IL_2QBG_005, IL_3UXR_111, IL_1FEU_001, IL_1FEU_002 |
- Annotations
-
- Bacterial 5S Loop E (H) (1)
- Bacterial 5S Loop E (1)
- Basepair signature
- Heat map statistics
- Min 0.27 | Avg 0.13 | Max 0.27
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