#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8 9break 10 11 12 13 14 15 16 17 181-182-173-164-156-137-128-119-10
1 IL_364D_003364D0.00000Bacterial 5S Loop EB+CRNA (19-mer) + RNA (31-mer)C71G72A73U74G75G76U77A78G79*C97G98A99G100A101G102U103A104G105cWWtSHtHWntHWcWBntWHtHScWW
2 IL_2ZJR_1062ZJR0.26650Bacterial 5S Loop E (H)Y 5S rRNAC73A74A75U76G77A78U79A80C81*G100A101A102A103A104G105U106C107G108cWWtSHtHWtHWncWBtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAUGGUAG*CGAGAGUAG1
CAAUGAUAC*GAAAAGUCG1
Non-Watson-Crick part of the motif
SequenceCounts
GAUGGUA*GAGAGUA1
AAUGAUA*AAAAGUC1

Release history

Release0.5
Date2011-12-08
StatusNew id, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_16614.1Only in the parent motif
IL_98756.1
Compare
IL_364D_003, IL_2ZJR_106IL_3F1H_112, IL_1DFU_001, IL_1FEU_002, IL_1FEU_001

Children motifs

Child motifCommon motif instancesOnly in IL_16614.1Only in the child motif
IL_25230.1
Compare
IL_364D_003, IL_2ZJR_106IL_1DFU_001, IL_2QBG_005, IL_3UXR_111, IL_1FEU_001, IL_1FEU_002
Annotations
  • Bacterial 5S Loop E (H) (1)
  • Bacterial 5S Loop E (1)
  • Basepair signature
    Heat map statistics
    Min 0.27 | Avg 0.13 | Max 0.27
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.1918 s