Motif IL_16628.1 Version IL_16628.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-8 | 3-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3F1H_072 | 3F1H | 0.6887 | 0 | A | 23S RRNA | G | 1856 | G | 1857 | G | 1858 | A | 1859 | G | 1860 | * | C | 1882 | G | 1883 | A | 1884 | A | 1885 | C | 1886 | cWW | tSH | ntSH | tHS | cWW | |||
| 2 | IL_1S72_089 | 1S72 | 0.6422 | 4 | 0 | LSU rRNA | C | 2672 | U | 2673 | G | 2674 | A | 2675 | C | 2676 | * | G | 2809 | G | 2810 | A | 2811 | A | 2813 | G | 2817 | cWW | tWH | tSH | tHS | cWW | |||
| 3 | IL_3F1H_020 | 3F1H | 0.6683 | 0 | A | 23S RRNA | U | 724 | G | 725 | G | 726 | A | 727 | G | 728 | * | U | 703 | G | 704 | A | 705 | A | 706 | G | 707 | cWW | tSH | tSH | ntHS | cWW | |||
| 4 | IL_1S72_083 | 1S72 | 0.0000 | 0 | Triple sheared (H) | 0 | LSU rRNA | G | 2501 | C | 2502 | A | 2503 | A | 2504 | G | 2505 | * | C | 2515 | G | 2516 | A | 2517 | C | 2518 | C | 2519 | cWW | cWB | ntSH | tHS | cWW | ||
| 5 | IL_2ZJR_094 | 2ZJR | 0.3552 | 4 | tSH-tHS-tHW (H) | X | LSU rRNA | U | 2615 | U | 2616 | G | 2617 | A | 2618 | G | 2619 | * | C | 2754 | A | 2755 | A | 2756 | A | 2758 | G | 2762 | cWW | tWH | tSH | ntHS | cWW | ||
| 6 | IL_3F1H_099 | 3F1H | 0.5066 | 4 | A | 23S RRNA | U | 2636 | U | 2637 | G | 2638 | A | 2639 | G | 2640 | * | C | 2774 | A | 2775 | A | 2776 | A | 2778 | G | 2782 | cWW | tWH | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUGAG*CAAGAUGAG | 2 |
| GGGAG*CGAAC | 1 |
| CUGAC*GGAAAAGAG | 1 |
| UGGAG*UGAAG | 1 |
| GCAAG*CGACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA*GAA | 2 |
| UGA*AAGAUGA | 2 |
| UGA*GAAAAGA | 1 |
| CAA*GAC | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_16628.1 | Only in the child motif |
|---|---|---|---|
| IL_42271.1 Compare | IL_1S72_089, IL_3F1H_099, IL_2ZJR_094 | IL_1S72_083, IL_3F1H_020, IL_3F1H_072 | IL_1S72_056 |
| IL_79318.1 Compare | IL_1S72_083, IL_3F1H_020, IL_3F1H_072 | IL_1S72_089, IL_3F1H_099, IL_2ZJR_094 | IL_1S72_028 |
- Annotations
-
- (4)
- Triple sheared (H) (1)
- tSH-tHS-tHW (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.17 | Avg 0.44 | Max 0.71
Coloring options: