Motif IL_16977.1 Version IL_16977.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-4 | 1-5 | 1-8 | 4-5 | 5-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_077 | 3U5F | 0.0000 | 5 | 6 | 18S rRNA | G | 1488 | U | 1489 | C | 1490 | C | 1494 | * | G | 1513 | U | 1514 | A | 1515 | C | 1518 | cWW | cWW | cSs | ||
| 2 | IL_4BPP_076 | 4BPP | 0.6889 | 5 | A | 18S RRNA | G | 1459 | U | 1460 | U | 1462 | C | 1465 | * | G | 1485 | U | 1486 | A | 1487 | C | 1490 | ncSs | tSS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCUAAC*GUAAUC | 1 |
| GUAUUUC*GUAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCUAA*UAAU | 1 |
| UAUUU*UAAU | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_16977.1 | Only in the parent motif |
|---|---|---|---|
| IL_62499.7 Compare | IL_3U5F_077 | IL_4BPP_076 | IL_2AW7_057, IL_1FJG_050 |
| IL_49976.1 Compare | IL_4BPP_076 | IL_3U5F_077 |
Children motifs
| Child motif | Common motif instances | Only in IL_16977.1 | Only in the child motif |
|---|---|---|---|
| IL_62499.9 Compare | IL_3U5F_077 | IL_4BPP_076 | IL_2AW7_057, IL_1FJG_050 |
| IL_57079.1 Compare | IL_4BPP_076 | IL_3U5F_077 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tSS-L-cSS-R-L-cWW
- Heat map statistics
- Min 0.69 | Avg 0.34 | Max 0.69
Coloring options: