Motif IL_17204.1 Version IL_17204.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_075 | 4A1B | 0.0000 | 2 | 1 | LSU rRNA | C | 1726 | U | 1727 | A | 1728 | G | 1730 | * | U | 1763 | G | 1764 | U | 1765 | A | 1766 | G | 1768 | cWW | cWW | |
| 2 | IL_4CUV_129 | 4CUV | 0.9969 | 2 | 1 | LSU rRNA | U | 3054 | U | 3055 | U | 3057 | G | 3059 | * | C | 3084 | G | 3085 | A | 3086 | A | 3087 | G | 3088 | cWW | ntWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAUG*UGUAUG | 1 |
| UUUUUG*CGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAU*GUAU | 1 |
| UUUU*GAA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_17204.1 | Only in the parent motif |
|---|---|---|---|
| IL_06180.1 Compare | IL_4A1B_075 | IL_4CUV_129 | IL_3U5F_007, IL_4BPP_007 |
Children motifs
| Child motif | Common motif instances | Only in IL_17204.1 | Only in the child motif |
|---|---|---|---|
| IL_17204.2 Compare | IL_4A1B_075, IL_4CUV_129 | IL_3CUN_001 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-R-L-cWW
- Heat map statistics
- Min 1.00 | Avg 0.50 | Max 1.00
Coloring options: