Motif IL_17806.1 Version IL_17806.1 of this group appears in releases 3.84 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | 3-6 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4WSM_372 | 4WSM | 0.3112 | 0 | 1K | tRNA | G | 46 | C | 47 | C | 48 | C | 49 | * | G | 55 | G | 56 | C | 57 | cWW | ncWW | ncWW | ||
2 | IL_4V87_185 | 4V87 | 0.0000 | 0 | BB | TRNA-LEU | G | 46 | C | 47 | C | 48 | C | 49 | * | G | 55 | G | 56 | C | 57 | cWW | ncWW | ncWW | ||
3 | IL_4QIK_001 | 4QIK | 0.5572 | 0 | D+C | RNA (23-mer) | U | 11 | G | 12 | U | 13 | G | 14 | * | C | 10 | U | 11 | G | 12 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GCCC*GGC | 2 |
UGUG*CUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CC*G | 2 |
GU*U | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.31 | Avg 0.34 | Max 0.66
Coloring options: