#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 5 61-41-62-32-54-54-6
1 IL_1U9S_0021U9S0.46211Major groove outside cWW, minor groove, intercalation pocketARIBONUCLEASE PC228C229*G111A112A114G115cWWcWW
2 IL_1FJG_0251FJG0.00000Major groove minor groove platform; mini C-loop (H)A SSU rRNAG597U598*A640U641A642C643cWWcWWcSHncSH
3 IL_1I6U_0041I6U0.09930D16S RRNA FRAGMENTG12U13*A24U25A26C27cWWcWWncSWcSHncSH
4 IL_1I6U_0021I6U0.09880Major groove minor groove platform; mini C-loopC16S RRNA FRAGMENTG12U13*A24U25A26C27cWWcWWncSWcSHncSH
5 IL_1S03_0031S030.10310Major groove minor groove platform; mini C-loopA47-MERG37U38*A12A13A14C15ntHWcWWcWWncSWcSHncSH
6 IL_1S03_0071S030.12190Major groove minor groove platform; mini C-loopB47-MERG37U38*A12A13A14C15ntHWcWWcWWncSWcSHncSH
7 IL_1S72_0681S720.27920Major groove minor groove platform; mini C-loop (H)0 LSU rRNAA1934C1935*G1902U1903A1904U1905cWWcWW
8 IL_1S72_1011S720.39740Major groove minor groove platform; mini C-loop (H)9 5S rRNAC29C30*G50A51A52G53cWWcWWcSWcSH
9 IL_1U9S_0041U9S0.55260Major groove minor groove platform; mini C-loopARIBONUCLEASE PC133G134*C164A165A166G167ncBWcWWcWWcSH
10 IL_1U9S_0051U9S0.58440Major groove outside cWW, minor groove, intercalation pocketARIBONUCLEASE PG161G162*C136A137G138C139cWWcWWntSH
11 IL_2ZJR_0692ZJR0.63260Major groove minor groove platform; mini C-loop (H)X LSU rRNAC1876C1877*G1838A1839A1840G1841cWWcWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
GU*AUAC3
GU*AAAC2
CC*GAAG2
CC*GAAAG1
AC*GUAU1
CG*CAAG1
GG*CAGC1
Non-Watson-Crick part of the motif
SequenceCounts
*AA5
*UA4
*AAA1
*AG1

Release history

Release0.10.20.3
Date2011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_17977.1Only in the child motif
IL_17977.2
Compare
IL_1S03_003, IL_1S72_101, IL_1S03_007, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_1S72_068, IL_1I6U_002, IL_1I6U_004, IL_2ZJR_069IL_1U9S_005
IL_53918.3
Compare
IL_1U9S_005IL_1S03_003, IL_1S72_101, IL_1S03_007, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_1S72_068, IL_1I6U_002, IL_1I6U_004, IL_2ZJR_069IL_1S72_060, IL_2ZJR_061
Annotations
  • Major groove minor groove platform; mini C-loop (H) (4)
  • Major groove minor groove platform; mini C-loop (4)
  • Major groove outside cWW, minor groove, intercalation pocket (2)
  • (1)
  • Basepair signature
    Heat map statistics
    Min 0.03 | Avg 0.38 | Max 0.87
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.0888 s