Motif IL_17977.1 Version IL_17977.1 of this group appears in releases 0.1 to 0.3
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-4 | 1-6 | 2-3 | 2-5 | 4-5 | 4-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U9S_002 | 1U9S | 0.4621 | 1 | Major groove intercalation | A | RNase P class A | C | 228 | C | 229 | * | G | 111 | A | 112 | A | 114 | G | 115 | cWW | cWW | ||||
| 2 | IL_1FJG_025 | 1FJG | 0.0000 | 0 | Major groove minor groove platform; mini C-loop (H) | A | SSU rRNA | G | 597 | U | 598 | * | A | 640 | U | 641 | A | 642 | C | 643 | cWW | cWW | cSH | ncSH | ||
| 3 | IL_1I6U_004 | 1I6U | 0.0993 | 0 | D | 16S RRNA FRAGMENT | G | 12 | U | 13 | * | A | 24 | U | 25 | A | 26 | C | 27 | cWW | cWW | ncSW | cSH | ncSH | ||
| 4 | IL_1I6U_002 | 1I6U | 0.0988 | 0 | Major groove minor groove platform; mini C-loop | C | 16S RRNA FRAGMENT | G | 12 | U | 13 | * | A | 24 | U | 25 | A | 26 | C | 27 | cWW | cWW | ncSW | cSH | ncSH | |
| 5 | IL_1S03_003 | 1S03 | 0.1031 | 0 | Major groove minor groove platform; mini C-loop | A | 47-MER | G | 37 | U | 38 | * | A | 12 | A | 13 | A | 14 | C | 15 | ntHW | cWW | cWW | ncSW | cSH | ncSH |
| 6 | IL_1S03_007 | 1S03 | 0.1219 | 0 | Major groove minor groove platform; mini C-loop | B | 47-MER | G | 37 | U | 38 | * | A | 12 | A | 13 | A | 14 | C | 15 | ntHW | cWW | cWW | ncSW | cSH | ncSH |
| 7 | IL_1S72_068 | 1S72 | 0.2792 | 0 | Major groove minor groove platform; mini C-loop (H) | 0 | LSU rRNA | A | 1934 | C | 1935 | * | G | 1902 | U | 1903 | A | 1904 | U | 1905 | cWW | cWW | ||||
| 8 | IL_1S72_101 | 1S72 | 0.3974 | 0 | Major groove minor groove platform; mini C-loop (H) | 9 | 5S rRNA | C | 29 | C | 30 | * | G | 50 | A | 51 | A | 52 | G | 53 | cWW | cWW | cSW | cSH | ||
| 9 | IL_1U9S_004 | 1U9S | 0.5526 | 0 | Major groove minor groove platform; mini C-loop | A | RNase P class A | C | 133 | G | 134 | * | C | 164 | A | 165 | A | 166 | G | 167 | ncBW | cWW | cWW | cSH | ||
| 10 | IL_1U9S_005 | 1U9S | 0.5844 | 0 | Minor groove platform, major groove intercalation | A | RNase P class A | G | 161 | G | 162 | * | C | 136 | A | 137 | G | 138 | C | 139 | cWW | cWW | ntSH | |||
| 11 | IL_2ZJR_069 | 2ZJR | 0.6326 | 0 | Major groove minor groove platform; mini C-loop (H) | X | LSU rRNA | C | 1876 | C | 1877 | * | G | 1838 | A | 1839 | A | 1840 | G | 1841 | cWW | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GU*AUAC | 3 |
| GU*AAAC | 2 |
| CC*GAAG | 2 |
| CC*GAAAG | 1 |
| AC*GUAU | 1 |
| CG*CAAG | 1 |
| GG*CAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 5 |
| *UA | 4 |
| *AAA | 1 |
| *AG | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_17977.1 | Only in the child motif |
|---|---|---|---|
| IL_17977.2 Compare | IL_1S03_003, IL_1S72_101, IL_1S03_007, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_1S72_068, IL_1I6U_002, IL_1I6U_004, IL_2ZJR_069 | IL_1U9S_005 | |
| IL_53918.3 Compare | IL_1U9S_005 | IL_1S03_003, IL_1S72_101, IL_1S03_007, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_1S72_068, IL_1I6U_002, IL_1I6U_004, IL_2ZJR_069 | IL_1S72_060, IL_2ZJR_061 |
- Annotations
-
- Major groove minor groove platform; mini C-loop (H) (4)
- Major groove minor groove platform; mini C-loop (4)
- (1)
- Major groove intercalation (1)
- Minor groove platform, major groove intercalation (1)
- Basepair signature
- Heat map statistics
- Min 0.03 | Avg 0.38 | Max 0.87
Coloring options: