Motif IL_18947.1 Version IL_18947.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3UXR_102 | 3UXR | 0.0000 | 3 | A | 23S ribosomal RNA | C | 2695 | U | 2696 | * | A | 2711 | G | 2714 | cWW | cWW | |
| 2 | IL_3U5F_086 | 3U5F | 0.1607 | 1 | 6 | 18S rRNA | U | 1743 | A | 1744 | * | U | 1656 | G | 1658 | cWW | cWW | |
| 3 | IL_2QBG_097 | 2QBG | 0.5786 | 2 | B | 23S rRNA | C | 2512 | A | 2513 | * | U | 2571 | G | 2574 | cWW | cWW | |
| 4 | IL_2ZJR_098 | 2ZJR | 0.6227 | 3 | X | LSU rRNA | C | 2674 | U | 2675 | * | A | 2690 | G | 2694 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CU*AUAAG | 1 |
| UA*UUG | 1 |
| CA*UACG | 1 |
| CU*ACAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *UAA | 1 |
| *U | 1 |
| *AC | 1 |
| *CAU | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_18947.1 | Only in the parent motif |
|---|---|---|---|
| IL_49994.1 Compare | IL_2QBG_097 | IL_2ZJR_098, IL_3U5F_086, IL_3UXR_102 | IL_2IPY_003, IL_2IPY_006, IL_2QBG_022, IL_3O58_043, IL_3PYO_068, IL_2QBG_076, IL_3PYO_086, IL_2ZJR_091, IL_1MJI_001, IL_1MJI_003, IL_397D_001, IL_2ZJR_072, IL_3O58_108, IL_1S72_070 |
| IL_14562.1 Compare | IL_2ZJR_098 | IL_3U5F_086, IL_3UXR_102, IL_2QBG_097 | IL_3PYO_093 |
Children motifs
| Child motif | Common motif instances | Only in IL_18947.1 | Only in the child motif |
|---|---|---|---|
| IL_31241.1 Compare | IL_2ZJR_098 | IL_3U5F_086, IL_3UXR_102, IL_2QBG_097 | |
| IL_71565.1 Compare | IL_3U5F_086 | IL_2ZJR_098, IL_3UXR_102, IL_2QBG_097 | IL_3V2F_082, IL_1S72_093 |
| IL_06429.1 Compare | IL_2QBG_097 | IL_2ZJR_098, IL_3U5F_086, IL_3UXR_102 | IL_387D_001, IL_3G78_015, IL_3V2F_095, IL_2QBG_022, IL_3SN2_002, IL_1U9S_008, IL_1XOK_001, IL_4A1B_113, IL_2ZJR_091, IL_1XOK_002, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_3V2F_008 |
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