Motif IL_19669.1 Version IL_19669.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-6 | 4-5 | 4-11 | 5-11 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2HW8_001 | 2HW8 | 0.0000 | 0 | Kink-turn | B | 36-MER | G | 10 | G | 11 | A | 12 | G | 13 | * | C | 22 | G | 23 | C | 24 | G | 25 | A | 26 | A | 27 | A | 28 | C | 29 | cWW | tSH | ntSs | cWW | tsS | ncsS |
2 | IL_2VPL_001 | 2VPL | 0.1131 | 0 | Kink-turn | B | FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE | G | 10 | G | 11 | A | 12 | G | 13 | * | C | 33 | G | 34 | A | 35 | G | 36 | A | 37 | A | 38 | A | 39 | C | 40 | cWW | tSH | ntSs | cWW | tsS | |
3 | IL_2VPL_004 | 2VPL | 0.1264 | 0 | D | FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE | G | 10 | G | 11 | A | 12 | G | 13 | * | C | 33 | G | 34 | A | 35 | G | 36 | A | 37 | A | 38 | A | 39 | C | 40 | cWW | tSH | ntSs | cWW | tsS | ncsS |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGAG*CGAGAAAC | 2 |
GGAG*CGCGAAAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GA*GAGAAA | 2 |
GA*GCGAAA | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_19669.1 | Only in the child motif |
---|---|---|---|
IL_93335.1 Compare | IL_2VPL_004, IL_2HW8_001 | IL_2VPL_001 | IL_1U63_003, IL_1U63_001 |
IL_48723.1 Compare | IL_2VPL_001 | IL_2VPL_004, IL_2HW8_001 |
- Annotations
-
- Kink-turn (2)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.05 | Avg 0.07 | Max 0.13
Coloring options: