Motif IL_20796.2 Version IL_20796.2 of this group appears in releases 0.2 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-3 | 1-5 | 3-4 | 4-5 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_012 | 1FJG | 0.0000 | 1 | A | SSU rRNA | U | 249 | A | 250 | U | 252 | * | A | 274 | G | 275 | cWW | cWW | |||
2 | IL_1FJG_050 | 1FJG | 0.8637 | 5 | 180 degree turn (H) | A | SSU rRNA | C | 1277 | A | 1279 | C | 1282 | * | G | 1255 | G | 1258 | cWW | cWW | cSs | |
3 | IL_1XJR_004 | 1XJR | 1.1123 | 1 | 180 degree turn | A | s2m RNA | G | 28 | A | 29 | C | 31 | * | G | 19 | C | 20 | ncsS | cWW | cWW | ncsS |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UAGU*AG | 1 |
CUAAUC*GAUG | 1 |
GAUC*GC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AG* | 1 |
UAAU*AU | 1 |
AU* | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_20796.2 | Only in the parent motif |
---|---|---|---|
IL_20796.1 Compare | IL_1FJG_012, IL_1XJR_004 | IL_1FJG_050 | |
IL_88360.1 Compare | IL_1FJG_050 | IL_1FJG_012, IL_1XJR_004 |
Children motifs
Child motif | Common motif instances | Only in IL_20796.2 | Only in the child motif |
---|---|---|---|
IL_20796.3 Compare | IL_1FJG_050, IL_1XJR_004 | IL_1FJG_012 | |
IL_11363.2 Compare | IL_1FJG_012 | IL_1FJG_050, IL_1XJR_004 | IL_2ZJR_055, IL_3F1H_088, IL_2QWY_008, IL_2QWY_005, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_1S72_005, IL_2ZJR_084, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_001, IL_3G78_012, IL_3MOJ_004, IL_1S72_079, IL_1ZX7_003, IL_1T0E_001, IL_1FJG_057, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005 |
- Annotations
-
- (1)
- 180 degree turn (H) (1)
- 180 degree turn (1)
- Basepair signature
- Heat map statistics
- Min 0.43 | Avg 0.53 | Max 1.11
Coloring options: