#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-93-84-75-6
1 IL_3F1H_0923F1H0.00000A23S RRNAC2466C2467G2468A2469G2470*C2480G2481G2482C2483G2484cWWncWBcWW
2 IL_2ZJR_0882ZJR0.34080Triple sheared (H)X LSU rRNAC2445C2446G2447A2448G2449*C2459G2460G2461C2462G2463cWWcWBtHScWW
3 IL_2ZJR_0502ZJR0.63380X LSU rRNAC1383G1384C1385A1386G1387*U1370G1371A1372G1373G1374cWWtSHtWHtHScWW
4 IL_3F1H_0513F1H0.68020A23S RRNAC1370G1371U1372A1373G1374*U1357G1358A1359A1360G1361cWWtSHntWHtHScWW
5 IL_1FJG_0331FJG0.71070tSH-tHW-tHS (H)A SSU rRNAG799G800U801A802G803*C779A780A781A782C783cWWtSHtWHtHScWW
6 IL_1S72_0551S720.72730tSH-tHW-tHS (H)0 LSU rRNAG1542G1543U1544C1545G1546*U1639C1640A1641A1642C1643cWWtSHtWHtHScWW
7 IL_2QWY_0072QWY0.84720tSH-tHW-tHSCSAM-II riboswitchC16G17U18A19U20*A46A47A48A49G50cWWtSHtWHtHScWW
8 IL_1S72_0231S720.81000tSH-tHW-tHS (H)0 LSU rRNAC705G706C707A708G709*C719G720A721G722G723cWWtSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCGAG*CGGCG2
CGCAG*UGAGG1
UGAAG*CGUAG1
GGUAG*CAAAC1
GGUCG*UCAAC1
CGUAU*AAAAG1
CGCAG*CGAGG1
Non-Watson-Crick part of the motif
SequenceCounts
CGA*GGC2
GCA*GAG2
GUA*AAA2
GAA*GUA1
GUC*CAA1

Release history

Release0.3
Date2011-12-08
StatusNew id, 1 parent

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_21490.1Only in the child motif
IL_47124.1
Compare
IL_1S72_055, IL_3F1H_092, IL_2ZJR_050, IL_1FJG_033, IL_1S72_023, IL_2QWY_007, IL_3F1H_051, IL_2ZJR_088IL_2ZJR_012, IL_3F1H_015, IL_1S72_021, IL_1FJG_023, IL_3G78_002, IL_2ZJR_071, IL_2QWY_001
Annotations
  • tSH-tHW-tHS (H) (3)
  • (3)
  • tSH-tHW-tHS (1)
  • Triple sheared (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.25 | Avg 0.45 | Max 0.85
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