Motif IL_21490.1 Version IL_21490.1 of this group appears in releases 0.3 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3F1H_092 | 3F1H | 0.0000 | 0 | A | 23S RRNA | C | 2466 | C | 2467 | G | 2468 | A | 2469 | G | 2470 | * | C | 2480 | G | 2481 | G | 2482 | C | 2483 | G | 2484 | cWW | ncWB | cWW | |||
2 | IL_2ZJR_088 | 2ZJR | 0.3408 | 0 | Triple sheared (H) | X | LSU rRNA | C | 2445 | C | 2446 | G | 2447 | A | 2448 | G | 2449 | * | C | 2459 | G | 2460 | G | 2461 | C | 2462 | G | 2463 | cWW | cWB | tHS | cWW | |
3 | IL_2ZJR_050 | 2ZJR | 0.6338 | 0 | X | LSU rRNA | C | 1383 | G | 1384 | C | 1385 | A | 1386 | G | 1387 | * | U | 1370 | G | 1371 | A | 1372 | G | 1373 | G | 1374 | cWW | tSH | tWH | tHS | cWW | |
4 | IL_3F1H_051 | 3F1H | 0.6802 | 0 | A | 23S RRNA | C | 1370 | G | 1371 | U | 1372 | A | 1373 | G | 1374 | * | U | 1357 | G | 1358 | A | 1359 | A | 1360 | G | 1361 | cWW | tSH | ntWH | tHS | cWW | |
5 | IL_1FJG_033 | 1FJG | 0.7107 | 0 | tSH-tHW-tHS (H) | A | SSU rRNA | G | 799 | G | 800 | U | 801 | A | 802 | G | 803 | * | C | 779 | A | 780 | A | 781 | A | 782 | C | 783 | cWW | tSH | tWH | tHS | cWW |
6 | IL_1S72_055 | 1S72 | 0.7273 | 0 | tSH-tHW-tHS (H) | 0 | LSU rRNA | G | 1542 | G | 1543 | U | 1544 | C | 1545 | G | 1546 | * | U | 1639 | C | 1640 | A | 1641 | A | 1642 | C | 1643 | cWW | tSH | tWH | tHS | cWW |
7 | IL_2QWY_007 | 2QWY | 0.8472 | 0 | tSH-tHW-tHS | C | SAM-II riboswitch | C | 16 | G | 17 | U | 18 | A | 19 | U | 20 | * | A | 46 | A | 47 | A | 48 | A | 49 | G | 50 | cWW | tSH | tWH | tHS | cWW |
8 | IL_1S72_023 | 1S72 | 0.8100 | 0 | tSH-tHW-tHS (H) | 0 | LSU rRNA | C | 705 | G | 706 | C | 707 | A | 708 | G | 709 | * | C | 719 | G | 720 | A | 721 | G | 722 | G | 723 | cWW | tSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CCGAG*CGGCG | 2 |
CGCAG*UGAGG | 1 |
UGAAG*CGUAG | 1 |
GGUAG*CAAAC | 1 |
GGUCG*UCAAC | 1 |
CGUAU*AAAAG | 1 |
CGCAG*CGAGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CGA*GGC | 2 |
GCA*GAG | 2 |
GUA*AAA | 2 |
GAA*GUA | 1 |
GUC*CAA | 1 |
Release history
Release | 0.3 |
---|---|
Date | 2011-12-08 |
Status | New id, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_21490.1 | Only in the parent motif |
---|---|---|---|
IL_17030.2 Compare | IL_1S72_055, IL_3F1H_092, IL_2ZJR_050, IL_1FJG_033, IL_1S72_023, IL_2ZJR_088, IL_3F1H_051, IL_2QWY_007 | IL_3F1H_026, IL_2ZJR_012, IL_3F1H_015, IL_3MUR_002, IL_1S72_021, IL_1FJG_023, IL_3G78_002, IL_2ZJR_071, IL_2QWY_004, IL_2QWY_001 |
Children motifs
Child motif | Common motif instances | Only in IL_21490.1 | Only in the child motif |
---|---|---|---|
IL_47124.1 Compare | IL_1S72_055, IL_3F1H_092, IL_2ZJR_050, IL_1FJG_033, IL_1S72_023, IL_2QWY_007, IL_3F1H_051, IL_2ZJR_088 | IL_2ZJR_012, IL_3F1H_015, IL_1S72_021, IL_1FJG_023, IL_3G78_002, IL_2ZJR_071, IL_2QWY_001 |
- Annotations
-
- tSH-tHW-tHS (H) (3)
- (3)
- tSH-tHW-tHS (1)
- Triple sheared (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.25 | Avg 0.45 | Max 0.85
Coloring options: