Motif IL_22358.1 Version IL_22358.1 of this group appears in releases 1.9 to 1.11
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1MFQ_006 | 1MFQ | 0.0000 | 4 | A | SRP RNA | U | 181 | G | 182 | G | 187 | * | C | 212 | A | 213 | A | 214 | A | 215 | A | 216 | cWW | tSH | cWW |
2 | IL_4BPP_004 | 4BPP | 0.6632 | 2 | A | 18S RRNA | G | 423 | A | 424 | A | 425 | * | U | 41 | A | 42 | U | 43 | A | 45 | C | 47 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGAACCG*CAAAA | 1 |
GAA*UAUUAAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAACC*AAA | 1 |
A*AUUAA | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_22358.1 | Only in the parent motif |
---|---|---|---|
IL_06211.1 Compare | IL_4BPP_004 | IL_1MFQ_006 | IL_2AW7_003, IL_1FJG_003 |
IL_92280.1 Compare | IL_1MFQ_006 | IL_4BPP_004 |
Children motifs
Child motif | Common motif instances | Only in IL_22358.1 | Only in the child motif |
---|---|---|---|
IL_06211.3 Compare | IL_4BPP_004 | IL_1MFQ_006 | IL_2AW7_003, IL_1FJG_003 |
IL_80714.1 Compare | IL_1MFQ_006 | IL_4BPP_004 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-R-cWW
- Heat map statistics
- Min 0.66 | Avg 0.33 | Max 0.66
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