Motif IL_22829.2 Version IL_22829.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 5-10 | 6-10 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3NDB_002 | 3NDB | 0.4435 | 0 | M | SRP RNA | G | 247 | G | 248 | G | 249 | G | 250 | U | 251 | G | 252 | C | 253 | * | G | 128 | U | 129 | C | 130 | C | 131 | cWW | ncWS | cWW | |
| 2 | IL_8CRE_079 | 8CRE | 0.0000 | 0 | 1 | LSU rRNA | A | 1879 | A | 1880 | U | 1881 | A | 1882 | A | 1883 | U | 1884 | G | 1885 | * | C | 2324 | U | 2325 | A | 2326 | U | 2327 | cWW | tHS | cWW | |
| 3 | IL_8P9A_302 | 8P9A | 0.0850 | 0 | AR | LSU rRNA | A | 1883 | A | 1884 | U | 1885 | A | 1886 | A | 1887 | U | 1888 | G | 1889 | * | C | 2346 | U | 2347 | A | 2348 | U | 2349 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUAAUG*CUAU | 2 |
| GGGGUGC*GUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAU*UA | 2 |
| GGGUG*UC | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Heat map statistics
- Min 0.09 | Avg 0.22 | Max 0.45
Coloring options: