Motif IL_23428.1 Version IL_23428.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3O58_093 | 3O58 | 0.1949 | 0 | 1 | 25S ribosomal RNA | A | 1895 | A | 1896 | G | 1897 | * | C | 2338 | C | 2339 | U | 2340 | cWW | tWW | cWW | |
| 2 | IL_2QBG_063 | 2QBG | 0.0000 | 0 | B | 23S rRNA | G | 1663 | A | 1664 | A | 1665 | * | U | 1995 | C | 1996 | C | 1997 | cWW | tWW | cWW | |
| 3 | IL_1S72_060 | 1S72 | 0.1659 | 0 | Isolated tWW turn (H) | 0 | LSU rRNA | U | 1741 | A | 1742 | G | 1743 | * | C | 2036 | C | 2037 | A | 2038 | cWW | tWW | cWW |
| 4 | IL_2ZJR_061 | 2ZJR | 0.1911 | 0 | Isolated tWW turn (H) | X | LSU rRNA | U | 1680 | A | 1681 | A | 1682 | * | U | 1978 | C | 1979 | A | 1980 | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAG*CCU | 1 |
| GAA*UCC | 1 |
| UAG*CCA | 1 |
| UAA*UCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*C | 4 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_23428.1 | Only in the parent motif |
|---|---|---|---|
| IL_53918.3 Compare | IL_1S72_060, IL_2ZJR_061 | IL_3O58_093, IL_2QBG_063 | IL_1U9S_005 |
Children motifs
| Child motif | Common motif instances | Only in IL_23428.1 | Only in the child motif |
|---|---|---|---|
| IL_86357.1 Compare | IL_1S72_060, IL_2QBG_063, IL_2ZJR_061 | IL_3O58_093 | IL_3Q1Q_006, IL_3U5H_083, IL_3UXR_062, IL_2XZM_064, IL_4A1B_079 |
- Annotations
-
- Isolated tWW turn (H) (2)
- (2)
- Basepair signature
- Heat map statistics
- Min 0.17 | Avg 0.15 | Max 0.29
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