Motif IL_24546.3 Version IL_24546.3 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 5-6 | 5-7 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2XZM_028 | 2XZM | 0.3191 | 0 | A | 18S RRNA | A | 543 | G | 544 | G | 545 | G | 546 | C | 547 | A | 548 | A | 549 | G | 550 | * | C | 581 | U | 582 | cWW | ncSH | cWW | ||
| 2 | IL_3U5F_030 | 3U5F | 0.3213 | 0 | 6 | 18S rRNA | A | 550 | G | 551 | G | 552 | G | 553 | C | 554 | A | 555 | A | 556 | G | 557 | * | C | 587 | U | 588 | cWW | cSH | cWW | ||
| 3 | IL_1FJG_020 | 1FJG | 0.3066 | 0 | SSU/LSU pseudoknot (H) | A | SSU rRNA | C | 504 | G | 505 | G | 506 | C | 507 | C | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | ncSH | ntSW | cWW |
| 4 | IL_2AW7_027 | 2AW7 | 0.2975 | 0 | A | 16S ribosomal RNA | C | 504 | G | 505 | G | 506 | C | 507 | U | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | cWW | |||
| 5 | IL_4A1B_055 | 4A1B | 0.1683 | 0 | 1 | 26S RRNA | C | 1200 | G | 1201 | C | 1202 | C | 1203 | C | 1204 | A | 1205 | A | 1206 | A | 1207 | * | U | 1352 | G | 1353 | cWW | cSH | cWW | ||
| 6 | IL_1S72_039 | 1S72 | 0.1478 | 0 | SSU/LSU pseudoknot (H) | 0 | LSU rRNA | U | 1101 | C | 1102 | C | 1103 | C | 1104 | C | 1105 | A | 1106 | A | 1107 | G | 1108 | * | C | 1254 | A | 1255 | cWW | cSH | cWW | |
| 7 | IL_4IOA_033 | 4IOA | 0.0921 | 0 | SSU/LSU pseudoknot | X | LSU rRNA | U | 1015 | C | 1016 | C | 1017 | C | 1018 | U | 1019 | A | 1020 | A | 1021 | A | 1022 | * | U | 1161 | A | 1162 | cWW | cSH | cWW | |
| 8 | IL_3V2F_037 | 3V2F | 0.0000 | 0 | A | 23S Ribosomal RNA | C | 1004 | C | 1005 | C | 1006 | C | 1007 | C | 1008 | A | 1009 | A | 1010 | G | 1011 | * | C | 1150 | G | 1151 | cWW | cSH | cWW | ||
| 9 | IL_2QBG_037 | 2QBG | 0.0993 | 0 | B | 23S rRNA | U | 1004 | C | 1005 | C | 1006 | C | 1007 | A | 1008 | A | 1009 | A | 1010 | G | 1011 | * | C | 1150 | A | 1151 | cWW | ncSH | cWW | ||
| 10 | IL_3U5H_054 | 3U5H | 0.3475 | 0 | 5 | 25S rRNA | U | 1173 | G | 1174 | C | 1175 | C | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | * | U | 1325 | A | 1326 | cWW | chH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGGGCAAG*CU | 2 |
| CGGCCAAC*GG | 1 |
| CGGCUAAC*GG | 1 |
| CGCCCAAA*UG | 1 |
| UCCCCAAG*CA | 1 |
| UCCCUAAA*UA | 1 |
| CCCCCAAG*CG | 1 |
| UCCCAAAG*CA | 1 |
| UGCCGGAA*UA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGCAA* | 2 |
| CCCCAA* | 2 |
| GGCCAA* | 1 |
| GGCUAA* | 1 |
| GCCCAA* | 1 |
| CCCUAA* | 1 |
| CCCAAA* | 1 |
| GCCGGA* | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_24546.3 | Only in the parent motif |
|---|---|---|---|
| IL_24546.2 Compare | IL_2QBG_037, IL_2XZM_028, IL_3U5H_054, IL_3U5F_030, IL_1S72_039, IL_1FJG_020, IL_3V2F_037, IL_2AW7_027, IL_4A1B_055 | IL_4IOA_033 | IL_2ZJR_033 |
Children motifs
| Child motif | Common motif instances | Only in IL_24546.3 | Only in the child motif |
|---|---|---|---|
| IL_24546.4 Compare | IL_2QBG_037, IL_3U5H_054, IL_3U5F_030, IL_1S72_039, IL_1FJG_020, IL_3V2F_037, IL_4IOA_033, IL_2AW7_027, IL_4A1B_055 | IL_2XZM_028 | IL_4BPP_029 |
- Annotations
-
- (7)
- SSU/LSU pseudoknot (H) (2)
- SSU/LSU pseudoknot (1)
- Basepair signature
- cWW-L-L-L-cSH-L-cWW
- Heat map statistics
- Min 0.09 | Avg 0.25 | Max 0.43
Coloring options: