Motif IL_25271.1 Version IL_25271.1 of this group appears in releases 0.6 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_012 | 2AW7 | 0.0000 | 1 | A | 16S ribosomal RNA | G | 147 | G | 148 | A | 149 | U | 150 | A | 151 | A | 152 | C | 153 | * | G | 168 | C | 169 | U | 170 | A | 171 | A | 172 | A | 174 | C | 175 | cWW | cWW | tWH | tWH | tHW | ntHW | cWW | |
| 2 | IL_3U5F_011 | 3U5F | 0.1630 | 1 | 6 | 18S rRNA | G | 143 | U | 144 | A | 145 | U | 146 | A | 147 | A | 148 | C | 149 | * | G | 165 | C | 166 | U | 167 | A | 168 | A | 169 | A | 171 | C | 172 | cWW | tWH | tWH | tHW | tHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUAAC*GCUAAUAC | 1 |
| GUAUAAC*GCUAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAA*CUAAUA | 1 |
| UAUAA*CUAAUA | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_25271.1 | Only in the parent motif |
|---|---|---|---|
| IL_56093.1 Compare | IL_2AW7_012 | IL_3U5F_011 |
Children motifs
| Child motif | Common motif instances | Only in IL_25271.1 | Only in the child motif |
|---|---|---|---|
| IL_25271.2 Compare | IL_2AW7_012, IL_3U5F_011 | IL_4BPP_011 |
- Annotations
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Heat map statistics
- Min 0.16 | Avg 0.08 | Max 0.16
Coloring options: