#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 13 141-142-133-124-115-106-97-8
1 IL_4BPP_0114BPP0.10161A18S RRNAG137G138A139U140A141A142C143*G159C160U161A162A163A165C166cWWcWWtWHtWHtHWntHWcWW
2 IL_3U5F_0113U5F0.00001618S rRNAG143U144A145U146A147A148C149*G165C166U167A168A169A171C172cWWtWHtWHtHWtHWcWW
3 IL_2AW7_0122AW70.16301A16S ribosomal RNAG147G148A149U150A151A152C153*G168C169U170A171A172A174C175cWWcWWtWHtWHtHWntHWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGAUAAC*GCUAAUAC2
GUAUAAC*GCUAAUAC1
Non-Watson-Crick part of the motif
SequenceCounts
GAUAA*CUAAUA2
UAUAA*CUAAUA1

Release history

Release1.51.61.71.81.91.101.111.121.131.141.15
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-272014-06-20
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_25271.2Only in the parent motif
IL_25271.1
Compare
IL_2AW7_012, IL_3U5F_011IL_4BPP_011

Children motifs

Child motifCommon motif instancesOnly in IL_25271.2Only in the child motif
IL_86694.1
Compare
IL_2AW7_012, IL_3U5F_011, IL_4BPP_011IL_1VX2_048, IL_3J7A_011
Annotations
  • (3)
  • Basepair signature
    cWW-cWW-tWH-tWH-tHW-tHW-cWW
    Heat map statistics
    Min 0.10 | Avg 0.10 | Max 0.17
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