Motif IL_25271.2 Version IL_25271.2 of this group appears in releases 1.5 to 1.15
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4BPP_011 | 4BPP | 0.1016 | 1 | A | 18S RRNA | G | 137 | G | 138 | A | 139 | U | 140 | A | 141 | A | 142 | C | 143 | * | G | 159 | C | 160 | U | 161 | A | 162 | A | 163 | A | 165 | C | 166 | cWW | cWW | tWH | tWH | tHW | ntHW | cWW |
2 | IL_3U5F_011 | 3U5F | 0.0000 | 1 | 6 | 18S rRNA | G | 143 | U | 144 | A | 145 | U | 146 | A | 147 | A | 148 | C | 149 | * | G | 165 | C | 166 | U | 167 | A | 168 | A | 169 | A | 171 | C | 172 | cWW | tWH | tWH | tHW | tHW | cWW | |
3 | IL_2AW7_012 | 2AW7 | 0.1630 | 1 | A | 16S ribosomal RNA | G | 147 | G | 148 | A | 149 | U | 150 | A | 151 | A | 152 | C | 153 | * | G | 168 | C | 169 | U | 170 | A | 171 | A | 172 | A | 174 | C | 175 | cWW | cWW | tWH | tWH | tHW | ntHW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGAUAAC*GCUAAUAC | 2 |
GUAUAAC*GCUAAUAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAUAA*CUAAUA | 2 |
UAUAA*CUAAUA | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_25271.2 | Only in the parent motif |
---|---|---|---|
IL_25271.1 Compare | IL_2AW7_012, IL_3U5F_011 | IL_4BPP_011 |
Children motifs
Child motif | Common motif instances | Only in IL_25271.2 | Only in the child motif |
---|---|---|---|
IL_86694.1 Compare | IL_2AW7_012, IL_3U5F_011, IL_4BPP_011 | IL_1VX2_048, IL_3J7A_011 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.10 | Max 0.17
Coloring options: