#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 10 111-112-103-84-75-6
1 IL_1VW3_0861VW30.00001A21S ribosomal RNAU2954G2955A2957U2958C2959*G3053A3054U3055A3056A3057G3058cWWtSHcWW
2 IL_4A1B_0304A1B0.94500126S RRNAC751C752A753A754G755*U764A765G766C767A768G769cWWntSHtHStHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGUAUC*GAUAAG1
CCAAG*UAGCAG1
Non-Watson-Crick part of the motif
SequenceCounts
GUAU*AUAA1
CAA*AGCA1

Release history

Release1.141.15
Date2014-04-272014-06-20
StatusNew id, 1 parentExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_25541.1Only in the parent motif
IL_15840.2
Compare
IL_4A1B_030IL_1VW3_086IL_2AW7_066

Children motifs

Child motifCommon motif instancesOnly in IL_25541.1Only in the child motif
IL_62504.1
Compare
IL_4A1B_030IL_1VW3_086IL_1VWW_146, IL_2AW7_066
IL_06675.1
Compare
IL_1VW3_086IL_4A1B_030IL_2QBG_106
Annotations
  • (2)
  • Basepair signature
    cWW-tSH-L-R-R-R-L-cWW
    Heat map statistics
    Min 0.95 | Avg 0.47 | Max 0.95
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