Motif IL_25541.1 Version IL_25541.1 of this group appears in releases 1.14 to 1.15
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-8 | 4-7 | 5-6 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1VW3_086 | 1VW3 | 0.0000 | 1 | A | 21S ribosomal RNA | U | 2954 | G | 2955 | A | 2957 | U | 2958 | C | 2959 | * | G | 3053 | A | 3054 | U | 3055 | A | 3056 | A | 3057 | G | 3058 | cWW | tSH | cWW | ||
2 | IL_4A1B_030 | 4A1B | 0.9450 | 0 | 1 | 26S RRNA | C | 751 | C | 752 | A | 753 | A | 754 | G | 755 | * | U | 764 | A | 765 | G | 766 | C | 767 | A | 768 | G | 769 | cWW | ntSH | tHS | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGUAUC*GAUAAG | 1 |
CCAAG*UAGCAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUAU*AUAA | 1 |
CAA*AGCA | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_25541.1 | Only in the parent motif |
---|---|---|---|
IL_15840.2 Compare | IL_4A1B_030 | IL_1VW3_086 | IL_2AW7_066 |
Children motifs
Child motif | Common motif instances | Only in IL_25541.1 | Only in the child motif |
---|---|---|---|
IL_62504.1 Compare | IL_4A1B_030 | IL_1VW3_086 | IL_1VWW_146, IL_2AW7_066 |
IL_06675.1 Compare | IL_1VW3_086 | IL_4A1B_030 | IL_2QBG_106 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-L-R-R-R-L-cWW
- Heat map statistics
- Min 0.95 | Avg 0.47 | Max 0.95
Coloring options: