Motif IL_26222.2 Version IL_26222.2 of this group appears in releases 3.95 to 3.99

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9	1-3	1-9	2-4	2-6	4-9	5-6
1	IL_8CRE_043	8CRE	0.3159	1	C-loop with bulged stacked A's	1	LSU rRNA	G	995	C	996	A	998	A	999	U	1000	*	A	1042	A	1043	A	1044	C	1045		cWW		tWH	cWS	cWW
2	IL_8P9A_268	8P9A	0.3034	1	C-loop with bulged stacked A's	AR	LSU rRNA	G	999	C	1000	A	1002	A	1003	U	1004	*	A	1046	A	1047	A	1048	C	1049		cWW		tWH	cWS	cWW
3	IL_4WF9_033	4WF9	0.0000	0	C-loop	X	LSU rRNA	G	909	C	910	A	911	C	912	U	913	*	A	954	A	955	A	956	C	957	tSW	cWW	cSH	tWH	cWS	cWW
4	IL_7A0S_029	7A0S	0.1233	0	C-loop	X	LSU rRNA	G	877	C	878	A	879	C	880	U	881	*	A	921	A	922	A	923	C	924	ntSW	cWW	ncSH	tWH	cWS	cWW
5	IL_9DFE_028	9DFE	0.1563	0	C-loop with bulged stacked A's	1A	LSU rRNA	G	864	C	865	A	866	C	867	U	868	*	A	909	A	910	A	911	C	912	tSW	cWW	cSH	tWH	cWS	cWW
6	IL_5J7L_272	5J7L	0.2239	0	C-loop with bulged stacked A's	DA	LSU rRNA	G	864	C	865	A	866	C	867	U	868	*	A	909	A	910	A	911	C	912		cWW	cSH	tWH	cWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCACU*AAAC	4
GCGAAU*AAAC	2

Non-Watson-Crick part of the motif

Sequence	Counts
CAC*AA	4
CGAA*AA	2

Release history

Release	3.95	3.96	3.97	3.98	3.99
Date	2025-03-26	2025-04-23	2025-05-21	2025-06-18	2025-07-16
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: C-loop with bulged stacked A's (4)
C-loop (2)
Basepair signature: cWW-cWS-cSH-tWH-R-L-R-cWW
Heat map statistics: Min 0.08 | Avg 0.22 | Max 0.37

Help

Coloring options: Nucleotide numbers

Copyright 2026 BGSU RNA group. Page generated in 0.576 s