Motif IL_26222.2 Version IL_26222.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-3 | 1-9 | 2-4 | 2-6 | 4-9 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_272 | 5J7L | 0.2239 | 0 | C-loop | DA | LSU rRNA | G | 864 | C | 865 | A | 866 | C | 867 | U | 868 | * | A | 909 | A | 910 | A | 911 | C | 912 | cWW | cSH | tWH | cWS | cWW | |
| 2 | IL_9DFE_028 | 9DFE | 0.1563 | 0 | 1A | LSU rRNA | G | 864 | C | 865 | A | 866 | C | 867 | U | 868 | * | A | 909 | A | 910 | A | 911 | C | 912 | tSW | cWW | cSH | tWH | cWS | cWW | |
| 3 | IL_7A0S_029 | 7A0S | 0.1233 | 0 | C-loop | X | LSU rRNA | G | 877 | C | 878 | A | 879 | C | 880 | U | 881 | * | A | 921 | A | 922 | A | 923 | C | 924 | ntSW | cWW | ncSH | tWH | cWS | cWW |
| 4 | IL_4WF9_033 | 4WF9 | 0.0000 | 0 | C-loop | X | LSU rRNA | G | 909 | C | 910 | A | 911 | C | 912 | U | 913 | * | A | 954 | A | 955 | A | 956 | C | 957 | tSW | cWW | cSH | tWH | cWS | cWW |
| 5 | IL_8P9A_268 | 8P9A | 0.3034 | 1 | C-loop (H) | AR | LSU rRNA | G | 999 | C | 1000 | A | 1002 | A | 1003 | U | 1004 | * | A | 1046 | A | 1047 | A | 1048 | C | 1049 | cWW | tWH | cWS | cWW | ||
| 6 | IL_8CRE_043 | 8CRE | 0.3159 | 1 | C-loop with bulged stacked A's (H) | 1 | LSU rRNA | G | 995 | C | 996 | A | 998 | A | 999 | U | 1000 | * | A | 1042 | A | 1043 | A | 1044 | C | 1045 | cWW | tWH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCACU*AAAC | 4 |
| GCGAAU*AAAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAC*AA | 4 |
| CGAA*AA | 2 |
- Annotations
-
- C-loop (3)
- C-loop with bulged stacked A's (H) (1)
- C-loop (H) (1)
- (1)
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.22 | Max 0.37
Coloring options: