Motif IL_27536.1 Version IL_27536.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VW3_014 | 1VW3 | 0.0000 | 1 | A | 21S ribosomal RNA | A | 433 | U | 434 | G | 435 | A | 436 | * | U | 453 | A | 455 | U | 456 | cWW | tSH | cWW |
| 2 | IL_2QBZ_002 | 2QBZ | 0.4934 | 1 | X | M-Box RNA, ykoK riboswitch aptamer | U | 159 | C | 160 | U | 161 | A | 162 | * | U | 23 | A | 25 | G | 26 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGA*UAAU | 1 |
| UCUA*UUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG*AA | 1 |
| CU*UA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_27536.1 | Only in the parent motif |
|---|---|---|---|
| IL_14081.1 Compare | IL_2QBZ_002 | IL_1VW3_014 | IL_4KR6_002, IL_1VWW_066 |
| IL_92986.1 Compare | IL_1VW3_014 | IL_2QBZ_002 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-L-cWW
- Heat map statistics
- Min 0.49 | Avg 0.25 | Max 0.49
Coloring options: