Motif IL_27618.2 Version IL_27618.2 of this group appears in releases 0.7 to 1.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7	1-7	2-6	3-4	3-6	4-5
1	IL_1X8W_009	1X8W	0.6795	0	A	Group I catalytic intron	G	331	U	403	U	404	G	405	*	C	316	U	317	C	318	cWW				cWW
2	IL_3U5H_071	3U5H	0.4057	0	5	LSU rRNA	G	1618	A	1619	U	1620	A	1621	*	U	1824	G	1825	C	1826	cWW			cSW	cWW
3	IL_3NPB_004	3NPB	0.4610	0	A	SAM-I riboswitch	C	45	A	46	A	47	C	48	*	G	77	U	78	G	79	cWW	ntSH	ncSH		cWW
4	IL_1J2B_003	1J2B	0.3740	0	D	tRNA	G	944	A	945	G	946	G	947	*	C	926	G	927	C	928	ncWW				cWW
5	IL_4A1B_089	4A1B	0.0000	1	1	LSU rRNA	G	2201	A	2202	A	2203	G	2205	*	C	2230	G	2231	C	2232	cWW	ncWW	ncSH		cWW
6	IL_3U5H_012	3U5H	0.3684	1	5	LSU rRNA	G	237	A	238	G	239	G	241	*	U	177	U	178	C	179	ncWW	ncWW	cSH		cWW
7	IL_3U5H_096	3U5H	0.4717	0	5	LSU rRNA	G	2391	C	2392	G	2393	G	2394	*	U	2986	A	2987	C	2988	cWW	cWW	cSH		cWW
8	IL_4A1B_093	4A1B	0.5042	0	1	LSU rRNA	G	2386	C	2387	G	2388	G	2389	*	U	2974	A	2975	C	2976	cWW	cWW	cSH		cWW
9	IL_1S72_072	1S72	0.4416	0	0	LSU rRNA	G	2090	G	2091	G	2092	G	2093	*	U	2652	A	2653	C	2654	cWW	cWW	cSH		cWW
10	IL_2ZJR_059	2ZJR	0.5343	1	X	LSU rRNA	G	1503	G	1504	U	1505	A	1507	*	U	1515	A	1516	C	1517	cWW	cWW			cWW
11	IL_3Q1Q_006	3Q1Q	0.8492	0	B	RNase P class A	G	198	G	199	C	200	U	201	*	A	179	G	180	C	181	cWW	ncBW			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCGG*UAC	2
GUUG*CUC	1
GAUA*UGC	1
CAAC*GUG	1
GAGG*CGC	1
GAAUG*CGC	1
GAGUG*UUC	1
GGGG*UAC	1
GGUCA*UAC	1
GGCU*AGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CG*A	2
UU*U	1
AU*G	1
AA*U	1
AG*G	1
AAU*G	1
AGU*U	1
GG*A	1
GUC*A	1
GC*G	1

Release history

Release	0.7	0.8	0.9	0.10	0.11	0.12	1.0
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_27618.2	Only in the parent motif
IL_27618.1 Compare	IL_1X8W_009, IL_1S72_072, IL_2ZJR_059, IL_3U5H_096, IL_4A1B_089, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093, IL_3NPB_004, IL_3U5H_012	IL_3Q1Q_006	IL_2DER_001
IL_86357.1 Compare	IL_3Q1Q_006	IL_1X8W_009, IL_1S72_072, IL_2ZJR_059, IL_3U5H_096, IL_4A1B_089, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093, IL_3NPB_004, IL_3U5H_012	IL_2QBG_063, IL_3UXR_062, IL_3U5H_083, IL_1S72_060, IL_4A1B_079, IL_2XZM_064, IL_2ZJR_061

Children motifs

Child motif	Common motif instances	Only in IL_27618.2	Only in the child motif
IL_43124.1 Compare	IL_1X8W_009, IL_3Q1Q_006, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093, IL_3NPB_004, IL_3U5H_012	IL_3U5H_096, IL_1S72_072, IL_4A1B_089, IL_2ZJR_059	IL_3V7E_007, IL_3GX5_003, IL_4B5R_003, IL_4AOB_003
IL_92267.1 Compare	IL_3U5H_096, IL_1S72_072	IL_1X8W_009, IL_2ZJR_059, IL_3Q1Q_006, IL_4A1B_089, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093, IL_3NPB_004, IL_3U5H_012	IL_3E5C_001
IL_90133.2 Compare	IL_4A1B_089	IL_1X8W_009, IL_4A1B_093, IL_2ZJR_059, IL_3Q1Q_006, IL_3U5H_096, IL_1J2B_003, IL_3U5H_071, IL_1S72_072, IL_3NPB_004, IL_3U5H_012	IL_2AW7_006, IL_3U5F_028, IL_4IOA_061, IL_3V2F_031, IL_1S72_053

Annotations: (11)
Basepair signature: cWW-cWW-cSH-cWW
Heat map statistics: Min 0.12 | Avg 0.55 | Max 0.98

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