Motif IL_28003.2 Version IL_28003.2 of this group appears in releases 1.14 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 3-4 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3Q1Q_009 | 3Q1Q | 0.0000 | 1 | Receptor of 11-nt loop-receptor motif | C | tRNA | U | 32 | A | 33 | G | 35 | * | C | 44 | U | 45 | A | 46 | A | 47 | G | 48 | cWW | tHW | cWW | ncSH |
| 2 | IL_4K27_004 | 4K27 | 0.2053 | 1 | Receptor of 11-nt loop-receptor motif | U | Myotonic Dystrophy Type 2 RNA | U | 34 | A | 35 | G | 37 | * | C | 19 | U | 20 | A | 21 | A | 22 | G | 23 | cWW | tHW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUG*CUAAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*UAA | 2 |
Release history
| Release | 1.14 | 1.15 | 1.17 | 1.18 |
|---|---|---|---|---|
| Date | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_28003.2 | Only in the parent motif |
|---|---|---|---|
| IL_28003.1 Compare | IL_4K27_004, IL_3Q1Q_009 | IL_3V2F_109 |
Children motifs
This motif has no children motifs.- Annotations
-
- Receptor of 11-nt loop-receptor motif (2)
- Basepair signature
- cWW-cSH-tHW-cWW
- Heat map statistics
- Min 0.21 | Avg 0.10 | Max 0.21
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