Motif IL_28026.2 Version IL_28026.2 of this group appears in releases 3.88 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-11 | 4-9 | 5-11 | 6-9 | 7-8 | 10-12 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_020 | 5J7L | 0.8112 | 1 | AA | SSU rRNA | U | 409 | G | 410 | A | 411 | G | 413 | A | 414 | A | 415 | G | 416 | * | U | 427 | G | 428 | U | 429 | A | 430 | A | 431 | A | 432 | G | 433 | cWW | tSH | tWH | tSS | tHW | tHH | cWW | cWH |
| 2 | IL_6CZR_359 | 6CZR | 0.0000 | 1 | 1a | SSU rRNA | G | 405 | G | 406 | A | 407 | G | 409 | A | 410 | A | 411 | G | 412 | * | U | 423 | G | 424 | U | 425 | A | 426 | A | 427 | A | 428 | C | 429 | ncWW | ntSH | ntWH | tSS | tHW | tHH | ncWW | ncWH |
| 3 | IL_4LFB_017 | 4LFB | 0.1720 | 1 | A | SSU rRNA | G | 409 | G | 410 | A | 411 | G | 413 | A | 414 | A | 415 | G | 416 | * | U | 427 | G | 428 | U | 429 | A | 430 | A | 431 | A | 432 | C | 433 | cWW | ntSH | tWH | tSS | tHW | tHH | cWW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAGAAG*UGUAAAC | 2 |
| UGAAGAAG*UGUAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGAA*GUAAA | 3 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW
- Heat map statistics
- Min 0.17 | Avg 0.40 | Max 0.82
Coloring options: